C1BIG7 (C1BIG7_ONCMY) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
DNA-directed RNA polymerase II 19 kDa polypeptide EMBL ACO08820.1

Gene names

Name:

RPB7 EMBL ACO08820.1

Organism

Oncorhynchus mykiss (Rainbow trout) (Salmo gairdneri) EMBL ACO08820.1

Taxonomic identifier

8022 [NCBI]

Taxonomic lineage

cellular organisms › Eukaryota › Opisthokonta › Metazoa › Eumetazoa › Bilateria › Deuterostomia › Chordata › Craniata › Vertebrata › Gnathostomata › Teleostomi › Euteleostomi › Actinopterygii › Actinopteri › Neopterygii › Teleostei › Elopocephala › Clupeocephala › Euteleostei › Protacanthopterygii › Salmoniformes › Salmonoidei › Salmonidae › Salmoninae › Oncorhynchus

Protein attributes

Sequence length	172 AA.
Sequence status	Complete.
Protein existence	Evidence at transcript level

Ontologies

Keywords
Biological process	Transcription
Cellular component	DNA-directed RNA polymerase EMBL ACO08820.1
Gene Ontology (GO)
Biological_process	transcription, DNA-dependent Inferred from electronic annotation. Source: InterPro
Molecular_function	DNA-directed RNA polymerase activity Inferred from electronic annotation. Source: UniProtKB-KW RNA binding Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	C1BIG7 [UniParc]. Last modified May 26, 2009. Version 1. Checksum: AF2229691B58CD5C	FASTA	172	19,264
	10 20 30 40 50 60 MFYHISLEHE ILLHPRYFGP NLLNTVKQKL FTEVEGTCTG KYGFVIAVTT IDNIGAGVIQ 70 80 90 100 110 120 PGRGFVLYPV KYKAIVFRPF KGEVVDAVVT QVNKVGLFTE IGPMSCFISR HSIPSEMEFD 130 140 150 160 170 PNSNPPCYKT TDEDIVIQQD DEIRLKIVGT RVDKNDIFAI GSLMDDYLGL VS

References

[1]

"Oncorhynchus mykiss ESTs and full-length cDNAs from White Blood Cells." cGRASP (B.F. Koop & W.S. Davidson) Yasuike M., von Schalburg K., Cooper G., Leong J., Davidson W.S., Koop B.F. Submitted (MAR-2009) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE. Tissue: White blood cell EMBL ACO08820.1.

Cross-references

Sequence databases
EMBL GenBank DDBJ	BT074396 mRNA. Translation: ACO08820.1.
RefSeq	NP_001158701.1. NM_001165229.1.
UniGene	Omy.9352.
3D structure databases
ModBase	Search...
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
GeneID	100305324.
Organism-specific databases
CTD	261631.
Family and domain databases
Gene3D	2.40.50.140. 1 hit. 3.30.1490.120. 1 hit.
InterPro	IPR012340. NA-bd_OB-fold. IPR003029. Rbsml_prot_S1_RNA-bd_dom. IPR022967. RNA-binding_domain_S1. IPR005576. RNA_pol_Rpb7_N. [Graphical view]
Pfam	PF00575. S1. 1 hit. PF03876. SHS2_Rpb7-N. 1 hit. [Graphical view]
SMART	SM00316. S1. 1 hit. [Graphical view]
SUPFAM	SSF50249. Nucleic_acid_OB. 1 hit. SSF88798. RNA_pol_Rpb7_N. 1 hit.
ProtoNet	Search...

Entry information

Entry name

C1BIG7_ONCMY

Accession

Primary (citable) accession number: C1BIG7

Entry history

Integrated into UniProtKB/TrEMBL:	May 26, 2009
Last sequence update:	May 26, 2009
Last modified:	May 29, 2013
This is version 17 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)