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C1B9N1 (Y4137_RHOOB) Reviewed, UniProtKB/Swiss-Prot

Last modified January 25, 2012. Version 18. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (2) | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesRecommended name:
UPF0133 protein ROP_41370
Gene names
Ordered Locus Names:ROP_41370
OrganismRhodococcus opacus (strain B4) [Complete proteome] [HAMAP]
Taxonomic identifier632772 [NCBI]
Taxonomic lineageBacteria › Actinobacteria › Actinobacteridae › Actinomycetales › Corynebacterineae › Nocardiaceae › Rhodococcus

Protein attributes

Sequence length113 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Subunit structure

Homodimer By similarity. HAMAP MF_00274

Sequence similarities

Belongs to the UPF0133 family.

Ontologies

Keywords
   Technical termComplete proteome
Gene Ontology (GO)
None. [Check GOA]

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 113113UPF0133 protein ROP_41370 HAMAP MF_00274
PRO_1000197672

Sequences

Sequence LengthMass (Da)Tools
C1B9N1 [UniParc].

Last modified May 26, 2009. Version 1.
Checksum: B178809CA69C816D

FASTA11311,356
        10         20         30         40         50         60 
MQPGGQPDMS QLLAQAQQMQ QQLMAAQQEM AEAEVTGQAG GGLVTATVKG TGEVVGLKID 

        70         80         90        100        110 
PKVVDPDDVE TLQDLVIGAI EDASSKAQEI AAQKLGPLAG GFGGGGLPGL PGF

« Hide

References

[1]"Comparison of the complete genome sequences of Rhodococcus erythropolis PR4 and Rhodococcus opacus B4."
Takarada H., Sekine M., Hosoyama A., Yamada R., Fujisawa T., Omata S., Shimizu A., Tsukatani N., Tanikawa S., Fujita N., Harayama S.
Submitted (MAR-2009) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: B4.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		AP011115 Genomic DNA. Translation: BAH52384.1.
RefSeqYP_002781329.1. NC_012522.1.

3D structure databases

ProteinModelPortalC1B9N1.
ModBaseSearch...

Protein-protein interaction databases

STRINGC1B9N1.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

GeneID7740864.
GenomeReviewsGene locus ROP_41370 in contig AP011115_GR.
KEGGrop:ROP_41370.
PATRIC23225575. VBIRhoOpa21106_4169.

Organism-specific databases

CMRSearch...

Phylogenomic databases

OMAMADFLGM.
ProtClustDBPRK00153.

Family and domain databases

HAMAPMF_00274. UPF0133.
[Tree]
InterProIPR004401. UPF0133.
[Graphical view]
Gene3DG3DSA:3.30.1310.10. CHP103. 1 hit.
KOK09747.
PfamPF02575. DUF149. 1 hit.
[Graphical view]
PIRSFPIRSF004555. UCP004555. 1 hit.
SUPFAMSSF82607. CHP00103. 1 hit.
TIGRFAMsTIGR00103. DNA_YbaB_EbfC. 1 hit.
ProtoNetSearch...

Entry information

Entry nameY4137_RHOOB
AccessionPrimary (citable) accession number: C1B9N1
Entry history
Integrated into UniProtKB/Swiss-Prot: July 28, 2009
Last sequence update: May 26, 2009
Last modified: January 25, 2012
This is version 18 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Relevant documents

Uncharacterized protein families (UPF)

List of uncharacterized protein family (UPF) entries

SIMILARITY comments

Index of protein domains and families

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