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Protein
Submitted name:

Putative LuxR family transcriptional regulator

Gene

ROP_68950

Organism
Rhodococcus opacus (strain B4)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

  1. DNA binding Source: UniProtKB-KW
  2. sequence-specific DNA binding transcription factor activity Source: InterPro

GO - Biological processi

  1. transcription, DNA-templated Source: UniProtKB-KW
Complete GO annotation...

Keywords - Biological processi

Transcription, Transcription regulationUniRule annotation

Keywords - Ligandi

DNA-bindingUniRule annotationSAAS annotation

Enzyme and pathway databases

BioCyciROPA632772:GH0Q-6951-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
Putative LuxR family transcriptional regulatorImported
Gene namesi
Ordered Locus Names:ROP_68950Imported
OrganismiRhodococcus opacus (strain B4)Imported
Taxonomic identifieri632772 [NCBI]
Taxonomic lineageiBacteriaActinobacteriaActinobacteridaeActinomycetalesCorynebacterineaeNocardiaceaeRhodococcus
ProteomesiUP000002212 Componenti: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi632772.ROP_68950.

Structurei

3D structure databases

ProteinModelPortaliC1B4F3.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Contains 1 HTH luxR-type DNA-binding domain.UniRule annotation

Phylogenomic databases

eggNOGiCOG2197.
HOGENOMiHOG000268981.
OMAiTRCQRGA.
OrthoDBiEOG6G4VQG.

Family and domain databases

Gene3Di1.10.10.10. 1 hit.
1.10.3210.10. 1 hit.
InterProiIPR003607. HD/PDEase_dom.
IPR006674. HD_domain.
IPR016032. Sig_transdc_resp-reg_C-effctor.
IPR000792. Tscrpt_reg_LuxR_C.
IPR011991. WHTH_DNA-bd_dom.
[Graphical view]
PfamiPF00196. GerE. 1 hit.
[Graphical view]
PRINTSiPR00038. HTHLUXR.
SMARTiSM00471. HDc. 1 hit.
SM00421. HTH_LUXR. 1 hit.
[Graphical view]
SUPFAMiSSF46894. SSF46894. 1 hit.
PROSITEiPS50043. HTH_LUXR_2. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

C1B4F3-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MHPHGRPPGP DKGLSRAELL AAVSLAIDLG LGQPMEHMLR SSLIATRIAE
60 70 80 90 100
RMGLDPQQRA TVYYANLIGW IGCHADSHEL SALFGDDIAF RADTYTVDMT
110 120 130 140 150
GLPFLRLMTG HVGRGLPGWK RGISAAVFLV AARSQVATLI HSHCSSAGVL
160 170 180 190 200
SDRMGLDGQV GQALAYAFER WDGRGLPNGC RGEGIPVEIH IAHVADVVEV
210 220 230 240 250
HLRTGGLEHA KDVLRCRRGS QFSPAVADVF ERDAAAIVDG LFDMDVWIAA
260 270 280 290 300
LTRAPDRDRT LGAEESDELL RAMADFVDLK SPFTLGHSRG VAGLAAGAAR
310 320 330 340 350
HLGMSPPDVT HLYRAGLVHS LGKMGVSNQI WEKKGPLTTA EWERVRMYPD
360 370 380 390 400
LTGRILRRVN GLESVVSVAM KHRERLDGSG FPRGIAGAEL TAKDRLLAAA
410 420 430 440 450
EAYQGLLEPR PHRPALDARG AADRLGEEAR AGRLDAESVA AVLAAAGQRQ
460 470 480 490 500
SRRTPWPAGL TDREVEILRL VAQGRSNKEI AAELFIAEKT ARNHVERVYA
510 520 530
KLGVNNRTQA GLAAIDRGLV GYPVDAPVGK
Length:530
Mass (Da):57,108
Last modified:May 26, 2009 - v1
Checksum:iD8B6027793798D68
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AP011115 Genomic DNA. Translation: BAH55142.1.
RefSeqiWP_015890572.1. NC_012522.1.
YP_002784087.1. NC_012522.1.

Genome annotation databases

EnsemblBacteriaiBAH55142; BAH55142; ROP_68950.
KEGGirop:ROP_68950.
PATRICi23231243. VBIRhoOpa21106_6980.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AP011115 Genomic DNA. Translation: BAH55142.1.
RefSeqiWP_015890572.1. NC_012522.1.
YP_002784087.1. NC_012522.1.

3D structure databases

ProteinModelPortaliC1B4F3.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi632772.ROP_68950.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiBAH55142; BAH55142; ROP_68950.
KEGGirop:ROP_68950.
PATRICi23231243. VBIRhoOpa21106_6980.

Phylogenomic databases

eggNOGiCOG2197.
HOGENOMiHOG000268981.
OMAiTRCQRGA.
OrthoDBiEOG6G4VQG.

Enzyme and pathway databases

BioCyciROPA632772:GH0Q-6951-MONOMER.

Family and domain databases

Gene3Di1.10.10.10. 1 hit.
1.10.3210.10. 1 hit.
InterProiIPR003607. HD/PDEase_dom.
IPR006674. HD_domain.
IPR016032. Sig_transdc_resp-reg_C-effctor.
IPR000792. Tscrpt_reg_LuxR_C.
IPR011991. WHTH_DNA-bd_dom.
[Graphical view]
PfamiPF00196. GerE. 1 hit.
[Graphical view]
PRINTSiPR00038. HTHLUXR.
SMARTiSM00471. HDc. 1 hit.
SM00421. HTH_LUXR. 1 hit.
[Graphical view]
SUPFAMiSSF46894. SSF46894. 1 hit.
PROSITEiPS50043. HTH_LUXR_2. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "Comparison of the complete genome sequences of Rhodococcus erythropolis PR4 and Rhodococcus opacus B4."
    Takarada H., Sekine M., Hosoyama A., Yamada R., Fujisawa T., Omata S., Shimizu A., Tsukatani N., Tanikawa S., Fujita N., Harayama S.
    Submitted (MAR-2009) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: B4Imported.

Entry informationi

Entry nameiC1B4F3_RHOOB
AccessioniPrimary (citable) accession number: C1B4F3
Entry historyi
Integrated into UniProtKB/TrEMBL: May 26, 2009
Last sequence update: May 26, 2009
Last modified: April 29, 2015
This is version 45 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.