C1B4F3 (C1B4F3_RHOOB) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Putative LuxR family transcriptional regulator EMBL BAH55142.1

Gene names

Ordered Locus Names:

ROP_68950 EMBL BAH55142.1

Organism

Rhodococcus opacus (strain B4) [Complete proteome] [HAMAP] EMBL BAH55142.1

Taxonomic identifier

632772 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Actinobacteria › Actinobacteria › Actinobacteridae › Actinomycetales › Corynebacterineae › Nocardiaceae › Rhodococcus › Rhodococcus opacus

Protein attributes

Sequence length	530 AA.
Sequence status	Complete.
Protein existence	Predicted

General annotation (Comments)

Sequence similarities

Contains 1 HTH luxR-type DNA-binding domain. RuleBase RU000707

Ontologies

Keywords
Biological process	Transcription Transcription regulation RuleBase RU000707
Ligand	DNA-binding RuleBase RU000707 SAAS SAAS000792
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	transcription, DNA-dependent Inferred from electronic annotation. Source: UniProtKB-KW
Cellular_component	intracellular Inferred from electronic annotation. Source: InterPro
Molecular_function	metal ion binding Inferred from electronic annotation. Source: InterPro phosphoric diester hydrolase activity Inferred from electronic annotation. Source: InterPro sequence-specific DNA binding Inferred from electronic annotation. Source: InterPro sequence-specific DNA binding transcription factor activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	C1B4F3 [UniParc]. Last modified May 26, 2009. Version 1. Checksum: D8B6027793798D68	FASTA	530	57,108
	10 20 30 40 50 60 MHPHGRPPGP DKGLSRAELL AAVSLAIDLG LGQPMEHMLR SSLIATRIAE RMGLDPQQRA 70 80 90 100 110 120 TVYYANLIGW IGCHADSHEL SALFGDDIAF RADTYTVDMT GLPFLRLMTG HVGRGLPGWK 130 140 150 160 170 180 RGISAAVFLV AARSQVATLI HSHCSSAGVL SDRMGLDGQV GQALAYAFER WDGRGLPNGC 190 200 210 220 230 240 RGEGIPVEIH IAHVADVVEV HLRTGGLEHA KDVLRCRRGS QFSPAVADVF ERDAAAIVDG 250 260 270 280 290 300 LFDMDVWIAA LTRAPDRDRT LGAEESDELL RAMADFVDLK SPFTLGHSRG VAGLAAGAAR 310 320 330 340 350 360 HLGMSPPDVT HLYRAGLVHS LGKMGVSNQI WEKKGPLTTA EWERVRMYPD LTGRILRRVN 370 380 390 400 410 420 GLESVVSVAM KHRERLDGSG FPRGIAGAEL TAKDRLLAAA EAYQGLLEPR PHRPALDARG 430 440 450 460 470 480 AADRLGEEAR AGRLDAESVA AVLAAAGQRQ SRRTPWPAGL TDREVEILRL VAQGRSNKEI 490 500 510 520 530 AAELFIAEKT ARNHVERVYA KLGVNNRTQA GLAAIDRGLV GYPVDAPVGK

References

[1]

"Comparison of the complete genome sequences of Rhodococcus erythropolis PR4 and Rhodococcus opacus B4." Takarada H., Sekine M., Hosoyama A., Yamada R., Fujisawa T., Omata S., Shimizu A., Tsukatani N., Tanikawa S., Fujita N., Harayama S. Submitted (MAR-2009) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: B4 EMBL BAH55142.1.

Cross-references

Sequence databases
EMBL GenBank DDBJ	AP011115 Genomic DNA. Translation: BAH55142.1.
RefSeq	YP_002784087.1. NC_012522.1.
3D structure databases
ModBase	Search...
Protein-protein interaction databases
STRING	632772.ROP_68950.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	BAH55142; BAH55142; ROP_68950.
GeneID	7745511.
KEGG	rop:ROP_68950.
PATRIC	23231243. VBIRhoOpa21106_6980.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	COG2197.
HOGENOM	HOG000268981.
OMA	DLGCSSN.
ProtClustDB	CLSK688397.
Enzyme and pathway databases
BioCyc	ROPA632772:GH0Q-6951-MONOMER.
Family and domain databases
Gene3D	1.10.10.10. 1 hit. 1.10.3210.10. 1 hit.
InterPro	IPR003607. HD/PDEase_dom. IPR006674. HD_domain. IPR016032. Sig_transdc_resp-reg_C-effctor. IPR000792. Tscrpt_reg_LuxR_C. IPR011991. WHTH_DNA-bd_dom. [Graphical view]
Pfam	PF00196. GerE. 1 hit. [Graphical view]
PRINTS	PR00038. HTHLUXR.
SMART	SM00471. HDc. 1 hit. SM00421. HTH_LUXR. 1 hit. [Graphical view]
SUPFAM	SSF46894. Bipartite_resp_reg_C-effector. 1 hit.
PROSITE	PS50043. HTH_LUXR_2. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

C1B4F3_RHOOB

Accession

Primary (citable) accession number: C1B4F3

Entry history

Integrated into UniProtKB/TrEMBL:	May 26, 2009
Last sequence update:	May 26, 2009
Last modified:	May 29, 2013
This is version 33 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)