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C1B4F3 (C1B4F3_RHOOB) Unreviewed, UniProtKB/TrEMBL

Last modified May 14, 2014. Version 38. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein names
Gene names
Ordered Locus Names:ROP_68950 EMBL BAH55142.1
OrganismRhodococcus opacus (strain B4) [Complete proteome] [HAMAP] EMBL BAH55142.1
Taxonomic identifier632772 [NCBI]
Taxonomic lineageBacteriaActinobacteriaActinobacteridaeActinomycetalesCorynebacterineaeNocardiaceaeRhodococcus

Protein attributes

Sequence length530 AA.
Sequence statusComplete.
Protein existencePredicted

General annotation (Comments)

Sequence similarities

Contains 1 HTH luxR-type DNA-binding domain. RuleBase RU000707

Sequences

Sequence LengthMass (Da)Tools
C1B4F3 [UniParc].

Last modified May 26, 2009. Version 1.
Checksum: D8B6027793798D68

FASTA53057,108
        10         20         30         40         50         60 
MHPHGRPPGP DKGLSRAELL AAVSLAIDLG LGQPMEHMLR SSLIATRIAE RMGLDPQQRA 

        70         80         90        100        110        120 
TVYYANLIGW IGCHADSHEL SALFGDDIAF RADTYTVDMT GLPFLRLMTG HVGRGLPGWK 

       130        140        150        160        170        180 
RGISAAVFLV AARSQVATLI HSHCSSAGVL SDRMGLDGQV GQALAYAFER WDGRGLPNGC 

       190        200        210        220        230        240 
RGEGIPVEIH IAHVADVVEV HLRTGGLEHA KDVLRCRRGS QFSPAVADVF ERDAAAIVDG 

       250        260        270        280        290        300 
LFDMDVWIAA LTRAPDRDRT LGAEESDELL RAMADFVDLK SPFTLGHSRG VAGLAAGAAR 

       310        320        330        340        350        360 
HLGMSPPDVT HLYRAGLVHS LGKMGVSNQI WEKKGPLTTA EWERVRMYPD LTGRILRRVN 

       370        380        390        400        410        420 
GLESVVSVAM KHRERLDGSG FPRGIAGAEL TAKDRLLAAA EAYQGLLEPR PHRPALDARG 

       430        440        450        460        470        480 
AADRLGEEAR AGRLDAESVA AVLAAAGQRQ SRRTPWPAGL TDREVEILRL VAQGRSNKEI 

       490        500        510        520        530 
AAELFIAEKT ARNHVERVYA KLGVNNRTQA GLAAIDRGLV GYPVDAPVGK 

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References

[1]"Comparison of the complete genome sequences of Rhodococcus erythropolis PR4 and Rhodococcus opacus B4."
Takarada H., Sekine M., Hosoyama A., Yamada R., Fujisawa T., Omata S., Shimizu A., Tsukatani N., Tanikawa S., Fujita N., Harayama S.
Submitted (MAR-2009) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: B4 EMBL BAH55142.1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
AP011115 Genomic DNA. Translation: BAH55142.1.
RefSeqYP_002784087.1. NC_012522.1.

3D structure databases

ProteinModelPortalC1B4F3.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING632772.ROP_68950.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaBAH55142; BAH55142; ROP_68950.
GeneID7745511.
KEGGrop:ROP_68950.
PATRIC23231243. VBIRhoOpa21106_6980.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG2197.
HOGENOMHOG000268981.
OMAFANARGH.
OrthoDBEOG6G4VQG.

Enzyme and pathway databases

BioCycROPA632772:GH0Q-6951-MONOMER.

Family and domain databases

Gene3D1.10.10.10. 1 hit.
1.10.3210.10. 1 hit.
InterProIPR003607. HD/PDEase_dom.
IPR006674. HD_domain.
IPR016032. Sig_transdc_resp-reg_C-effctor.
IPR000792. Tscrpt_reg_LuxR_C.
IPR011991. WHTH_DNA-bd_dom.
[Graphical view]
PfamPF00196. GerE. 1 hit.
[Graphical view]
PRINTSPR00038. HTHLUXR.
SMARTSM00471. HDc. 1 hit.
SM00421. HTH_LUXR. 1 hit.
[Graphical view]
SUPFAMSSF46894. SSF46894. 1 hit.
PROSITEPS50043. HTH_LUXR_2. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameC1B4F3_RHOOB
AccessionPrimary (citable) accession number: C1B4F3
Entry history
Integrated into UniProtKB/TrEMBL: May 26, 2009
Last sequence update: May 26, 2009
Last modified: May 14, 2014
This is version 38 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)