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C1B4F3

- C1B4F3_RHOOB

UniProt

C1B4F3 - C1B4F3_RHOOB

Protein
Submitted name:

Putative LuxR family transcriptional regulator

Gene

ROP_68950

Organism
Rhodococcus opacus (strain B4)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi
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    • History
      Entry version 39 (01 Oct 2014)
      Sequence version 1 (26 May 2009)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. DNA binding Source: UniProtKB-KW
    2. metal ion binding Source: InterPro
    3. phosphoric diester hydrolase activity Source: InterPro
    4. sequence-specific DNA binding transcription factor activity Source: InterPro

    GO - Biological processi

    1. transcription, DNA-templated Source: UniProtKB-KW

    Keywords - Biological processi

    Transcription, Transcription regulationUniRule annotation

    Keywords - Ligandi

    DNA-bindingUniRule annotationSAAS annotation

    Enzyme and pathway databases

    BioCyciROPA632772:GH0Q-6951-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    Putative LuxR family transcriptional regulatorImported
    Gene namesi
    Ordered Locus Names:ROP_68950Imported
    OrganismiRhodococcus opacus (strain B4)Imported
    Taxonomic identifieri632772 [NCBI]
    Taxonomic lineageiBacteriaActinobacteriaActinobacteridaeActinomycetalesCorynebacterineaeNocardiaceaeRhodococcus
    ProteomesiUP000002212: Chromosome

    Interactioni

    Protein-protein interaction databases

    STRINGi632772.ROP_68950.

    Structurei

    3D structure databases

    ProteinModelPortaliC1B4F3.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Sequence similaritiesi

    Contains 1 HTH luxR-type DNA-binding domain.UniRule annotation

    Phylogenomic databases

    eggNOGiCOG2197.
    HOGENOMiHOG000268981.
    OMAiFANARGH.
    OrthoDBiEOG6G4VQG.

    Family and domain databases

    Gene3Di1.10.10.10. 1 hit.
    1.10.3210.10. 1 hit.
    InterProiIPR003607. HD/PDEase_dom.
    IPR006674. HD_domain.
    IPR016032. Sig_transdc_resp-reg_C-effctor.
    IPR000792. Tscrpt_reg_LuxR_C.
    IPR011991. WHTH_DNA-bd_dom.
    [Graphical view]
    PfamiPF00196. GerE. 1 hit.
    [Graphical view]
    PRINTSiPR00038. HTHLUXR.
    SMARTiSM00471. HDc. 1 hit.
    SM00421. HTH_LUXR. 1 hit.
    [Graphical view]
    SUPFAMiSSF46894. SSF46894. 1 hit.
    PROSITEiPS50043. HTH_LUXR_2. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    C1B4F3-1 [UniParc]FASTAAdd to Basket

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    MHPHGRPPGP DKGLSRAELL AAVSLAIDLG LGQPMEHMLR SSLIATRIAE    50
    RMGLDPQQRA TVYYANLIGW IGCHADSHEL SALFGDDIAF RADTYTVDMT 100
    GLPFLRLMTG HVGRGLPGWK RGISAAVFLV AARSQVATLI HSHCSSAGVL 150
    SDRMGLDGQV GQALAYAFER WDGRGLPNGC RGEGIPVEIH IAHVADVVEV 200
    HLRTGGLEHA KDVLRCRRGS QFSPAVADVF ERDAAAIVDG LFDMDVWIAA 250
    LTRAPDRDRT LGAEESDELL RAMADFVDLK SPFTLGHSRG VAGLAAGAAR 300
    HLGMSPPDVT HLYRAGLVHS LGKMGVSNQI WEKKGPLTTA EWERVRMYPD 350
    LTGRILRRVN GLESVVSVAM KHRERLDGSG FPRGIAGAEL TAKDRLLAAA 400
    EAYQGLLEPR PHRPALDARG AADRLGEEAR AGRLDAESVA AVLAAAGQRQ 450
    SRRTPWPAGL TDREVEILRL VAQGRSNKEI AAELFIAEKT ARNHVERVYA 500
    KLGVNNRTQA GLAAIDRGLV GYPVDAPVGK 530
    Length:530
    Mass (Da):57,108
    Last modified:May 26, 2009 - v1
    Checksum:iD8B6027793798D68
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AP011115 Genomic DNA. Translation: BAH55142.1.
    RefSeqiYP_002784087.1. NC_012522.1.

    Genome annotation databases

    EnsemblBacteriaiBAH55142; BAH55142; ROP_68950.
    GeneIDi7745511.
    KEGGirop:ROP_68950.
    PATRICi23231243. VBIRhoOpa21106_6980.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AP011115 Genomic DNA. Translation: BAH55142.1 .
    RefSeqi YP_002784087.1. NC_012522.1.

    3D structure databases

    ProteinModelPortali C1B4F3.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 632772.ROP_68950.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai BAH55142 ; BAH55142 ; ROP_68950 .
    GeneIDi 7745511.
    KEGGi rop:ROP_68950.
    PATRICi 23231243. VBIRhoOpa21106_6980.

    Phylogenomic databases

    eggNOGi COG2197.
    HOGENOMi HOG000268981.
    OMAi FANARGH.
    OrthoDBi EOG6G4VQG.

    Enzyme and pathway databases

    BioCyci ROPA632772:GH0Q-6951-MONOMER.

    Family and domain databases

    Gene3Di 1.10.10.10. 1 hit.
    1.10.3210.10. 1 hit.
    InterProi IPR003607. HD/PDEase_dom.
    IPR006674. HD_domain.
    IPR016032. Sig_transdc_resp-reg_C-effctor.
    IPR000792. Tscrpt_reg_LuxR_C.
    IPR011991. WHTH_DNA-bd_dom.
    [Graphical view ]
    Pfami PF00196. GerE. 1 hit.
    [Graphical view ]
    PRINTSi PR00038. HTHLUXR.
    SMARTi SM00471. HDc. 1 hit.
    SM00421. HTH_LUXR. 1 hit.
    [Graphical view ]
    SUPFAMi SSF46894. SSF46894. 1 hit.
    PROSITEi PS50043. HTH_LUXR_2. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Comparison of the complete genome sequences of Rhodococcus erythropolis PR4 and Rhodococcus opacus B4."
      Takarada H., Sekine M., Hosoyama A., Yamada R., Fujisawa T., Omata S., Shimizu A., Tsukatani N., Tanikawa S., Fujita N., Harayama S.
      Submitted (MAR-2009) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: B4Imported.

    Entry informationi

    Entry nameiC1B4F3_RHOOB
    AccessioniPrimary (citable) accession number: C1B4F3
    Entry historyi
    Integrated into UniProtKB/TrEMBL: May 26, 2009
    Last sequence update: May 26, 2009
    Last modified: October 1, 2014
    This is version 39 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteomeImported

    External Data

    Dasty 3