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C1B2R9 (RIMM_RHOOB) Reviewed, UniProtKB/Swiss-Prot

Last modified January 25, 2012. Version 19. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (1) | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesRecommended name:
Ribosome maturation factor rimM
Gene names
Name:rimM
Ordered Locus Names:ROP_65890
OrganismRhodococcus opacus (strain B4) [Complete proteome] [HAMAP]
Taxonomic identifier632772 [NCBI]
Taxonomic lineageBacteria › Actinobacteria › Actinobacteridae › Actinomycetales › Corynebacterineae › Nocardiaceae › Rhodococcus

Protein attributes

Sequence length183 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Function

An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after rbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes By similarity. HAMAP MF_00014

Subunit structure

Binds ribosomal protein S19 By similarity. HAMAP MF_00014

Subcellular location

Cytoplasm By similarity HAMAP MF_00014.

Domain

The PRC barrel domain binds ribosomal protein S19 By similarity. HAMAP MF_00014

Sequence similarities

Belongs to the rimM family.

Contains 1 PRC barrel domain.

Ontologies

Keywords
   Biological processRibosome biogenesis
   Cellular componentCytoplasm
   Molecular functionChaperone
   Technical termComplete proteome
Gene Ontology (GO)
   Biological processrRNA processing

Inferred from electronic annotation. Source: InterPro

   Cellular componentribosome

Inferred from electronic annotation. Source: InterPro

   Molecular functionribosome binding

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 183183Ribosome maturation factor rimM HAMAP MF_00014
PRO_1000196568

Regions

Domain95 – 17177PRC barrel

Sequences

Sequence LengthMass (Da)Tools
C1B2R9 [UniParc].

Last modified May 26, 2009. Version 1.
Checksum: 64CE6F26DD9CC542

FASTA18319,556
        10         20         30         40         50         60 
MELVVGRVAK SHGIKGEIVV EVRTDEPEDR FAVGAVLRGH KPREQTVNTY RVEAAREHSG 

        70         80         90        100        110        120 
RLLLRLEGVP DRTAADALRG TLFVIDSAEL VPSDDPDEFY DHELEGLSVR LADGTELGAV 

       130        140        150        160        170        180 
IEVLHSAAGE LLSIRRAGEQ SGELLVPFVA AIVTSVSVAD GVVVIDPPEG LLDPDFGESA 


DGK

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References

[1]"Comparison of the complete genome sequences of Rhodococcus erythropolis PR4 and Rhodococcus opacus B4."
Takarada H., Sekine M., Hosoyama A., Yamada R., Fujisawa T., Omata S., Shimizu A., Tsukatani N., Tanikawa S., Fujita N., Harayama S.
Submitted (MAR-2009) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: B4.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		AP011115 Genomic DNA. Translation: BAH54836.1.
RefSeqYP_002783781.1. NC_012522.1.

3D structure databases

ProteinModelPortalC1B2R9.
ModBaseSearch...

Protein-protein interaction databases

STRINGC1B2R9.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

GeneID7745294.
GenomeReviewsGene locus ROP_65890 in contig AP011115_GR.
KEGGrop:ROP_65890.
PATRIC23230611. VBIRhoOpa21106_6670.

Organism-specific databases

CMRSearch...

Phylogenomic databases

OMAPDEFYDH.
ProtClustDBPRK00122.

Family and domain databases

HAMAPMF_00014. Ribosome_mat_RimM.
[Tree]
InterProIPR011961. 16S_RimM.
IPR007903. PRC_barrel.
IPR011033. PRC_barrell-like.
IPR002676. RimM.
IPR009000. Transl_elong_init/rib_B-barrel.
[Graphical view]
Gene3DG3DSA:2.40.30.60. G3DSA:2.40.30.60. 1 hit.
KOK02860.
PfamPF05239. PRC. 1 hit.
PF01782. RimM. 1 hit.
[Graphical view]
SUPFAMSSF50346. PRCH_cytoplasmic. 1 hit.
SSF50447. Translat_factor. 1 hit.
TIGRFAMsTIGR02273. 16S_RimM. 1 hit.
ProtoNetSearch...

Entry information

Entry nameRIMM_RHOOB
AccessionPrimary (citable) accession number: C1B2R9
Entry history
Integrated into UniProtKB/Swiss-Prot: July 28, 2009
Last sequence update: May 26, 2009
Last modified: January 25, 2012
This is version 19 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Relevant documents

SIMILARITY comments

Index of protein domains and families

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