C1B1L8 (C1B1L8_RHOOB) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Recommended name:
SsrA-binding protein HAMAP MF_00023

Gene names

Name:	smpB HAMAP MF_00023 EMBL BAH54713.1
Ordered Locus Names:	ROP_64660

Organism

Rhodococcus opacus (strain B4) [Complete proteome] [HAMAP]

Taxonomic identifier

632772 [NCBI]

Taxonomic lineage

Bacteria › Actinobacteria › Actinobacteridae › Actinomycetales › Corynebacterineae › Nocardiaceae › Rhodococcus

Protein attributes

Sequence length	157 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Function	Binds specifically to the SsrA RNA (tmRNA) and is required for stable association of SsrA with ribosomes By similarity. HAMAP MF_00023
Subcellular location	Cytoplasm By similarity HAMAP MF_00023.
Sequence similarities	Belongs to the SmpB family. HAMAP MF_00023

Ontologies

Keywords
Cellular component	Cytoplasm HAMAP MF_00023
Ligand	RNA-binding HAMAP MF_00023
Technical term	Complete proteome
Gene Ontology (GO)
Cellular component	cytoplasm Inferred from electronic annotation. Source: UniProtKB-SubCell
Molecular function	RNA binding Inferred from electronic annotation. Source: HAMAP
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	C1B1L8 [UniParc]. Last modified May 26, 2009. Version 1. Checksum: 9B795894FE9A9A53	FASTA	157	18,041
	10 20 30 40 50 60 MKEKGRKVIA TNRKARHNYT ILDVYEAGIA LVGTEVKSLR EGKASLVDAF ATVDDGEVWL 70 80 90 100 110 120 RSLHIPEYTQ GTWTNHSPRR TRKLLLHKRE IEHLVGKTRE GNQTLVPLSM YFSDGKVKVE 130 140 150 LALAKGKQDY DKRQDLARRT AEREVTRELG RRVKGMR

References

[1]

"Comparison of the complete genome sequences of Rhodococcus erythropolis PR4 and Rhodococcus opacus B4." Takarada H., Sekine M., Hosoyama A., Yamada R., Fujisawa T., Omata S., Shimizu A., Tsukatani N., Tanikawa S., Fujita N., Harayama S. Submitted (MAR-2009) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].

Cross-references

Sequence databases
EMBL GenBank DDBJ	AP011115 Genomic DNA. Translation: BAH54713.1.
RefSeq	YP_002783658.1. NC_012522.1.
3D structure databases
ModBase	Search...
Protein-protein interaction databases
STRING	C1B1L8.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
GeneID	7744333.
GenomeReviews	Gene locus ROP_64660 in contig AP011115_GR.
KEGG	rop:ROP_64660.
PATRIC	23230353. VBIRhoOpa21106_6544.
Organism-specific databases
CMR	Search...
Phylogenomic databases
OMA	EKYEAGI.
ProtClustDB	PRK05422.
Family and domain databases
HAMAP	MF_00023. SmpB. [Tree]
InterPro	IPR023620. SmpB. IPR000037. SsrA-bd_prot. IPR020081. SsrA-bd_prot_CS. [Graphical view]
Gene3D	G3DSA:2.40.280.10. SmpB. 1 hit.
KO	K03664.
Pfam	PF01668. SmpB. 1 hit. [Graphical view]
ProDom	PD004488. SmpB. 1 hit. [Graphical view] [Entries sharing at least one domain]
SUPFAM	SSF74982. SmpB. 1 hit.
TIGRFAMs	TIGR00086. SmpB. 1 hit.
PROSITE	PS01317. SSRP. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

C1B1L8_RHOOB

Accession

Primary (citable) accession number: C1B1L8

Entry history

Integrated into UniProtKB/TrEMBL:	May 26, 2009
Last sequence update:	May 26, 2009
Last modified:	December 14, 2011
This is version 18 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)