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C1B0C2 (PSD_RHOOB) Reviewed, UniProtKB/Swiss-Prot

Last modified January 25, 2012. Version 16. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (2) | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesRecommended name:
Phosphatidylserine decarboxylase proenzyme
EC=4.1.1.65

Cleaved into the following 2 chains:

  1. Phosphatidylserine decarboxylase alpha chain
  2. Phosphatidylserine decarboxylase beta chain
Gene names
Name:psd
Ordered Locus Names:ROP_18750
OrganismRhodococcus opacus (strain B4) [Complete proteome] [HAMAP]
Taxonomic identifier632772 [NCBI]
Taxonomic lineageBacteria › Actinobacteria › Actinobacteridae › Actinomycetales › Corynebacterineae › Nocardiaceae › Rhodococcus

Protein attributes

Sequence length237 AA.
Sequence statusComplete.
Sequence processingThe displayed sequence is further processed into a mature form.
Protein existenceInferred from homology

General annotation (Comments)

Catalytic activity

Phosphatidyl-L-serine = phosphatidylethanolamine + CO2. HAMAP MF_00664

Cofactor

Pyruvoyl group By similarity. HAMAP MF_00664

Pathway

Phospholipid metabolism; phosphatidylethanolamine biosynthesis; phosphatidylethanolamine from CDP-diacylglycerol: step 2/2. HAMAP MF_00664

Sequence similarities

Belongs to the phosphatidylserine decarboxylase family. Type 3 subfamily.

Ontologies

Keywords
   Biological processPhospholipid biosynthesis
   LigandPyruvate
   Molecular functionDecarboxylase
Lyase
   PTMZymogen
   Technical termComplete proteome
Gene Ontology (GO)
   Biological processphosphatidylethanolamine biosynthetic process

Inferred from electronic annotation. Source: InterPro

   Molecular functioncofactor binding

Inferred from electronic annotation. Source: InterPro

phosphatidylserine decarboxylase activity

Inferred from electronic annotation. Source: EC

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 205205Phosphatidylserine decarboxylase beta chain By similarity
PRO_1000192906
Chain206 – 23732Phosphatidylserine decarboxylase alpha chain By similarity
PRO_1000147644

Sites

Site205 – 2062Cleavage (non-hydrolytic) By similarity

Amino acid modifications

Modified residue2061Pyruvic acid (Ser) By similarity

Sequences

Sequence LengthMass (Da)Tools
C1B0C2 [UniParc].

Last modified May 26, 2009. Version 1.
Checksum: 2EA8A08A71DF2FA6

FASTA23724,944
        10         20         30         40         50         60 
MARKPTPPGT PQPTSVGHIV DLVRGAVPPL HPAGLPFVLA PLGVAVLGRN RKWVRRGALT 

        70         80         90        100        110        120 
SAAACAAFFR HPHRVPPNRV GVAVAPADGE VALVDSAVPP SELDMGTEPL PRVSIFLSVL 

       130        140        150        160        170        180 
DVHVQRSPVG GEVTKVVHRS GQFLSADLAD ASEVNERNSM LLHTAEGHDV AVIQIAGLLA 

       190        200        210        220        230 
RRIVCDAKVG DTLPIGDTYG LIRFGSRVDT YFPAGTTLLA ERGQRTIGAE TVIAQLP

« Hide

References

[1]"Comparison of the complete genome sequences of Rhodococcus erythropolis PR4 and Rhodococcus opacus B4."
Takarada H., Sekine M., Hosoyama A., Yamada R., Fujisawa T., Omata S., Shimizu A., Tsukatani N., Tanikawa S., Fujita N., Harayama S.
Submitted (MAR-2009) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: B4.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		AP011115 Genomic DNA. Translation: BAH50122.1.
RefSeqYP_002779067.1. NC_012522.1.

3D structure databases

ModBaseSearch...

Protein-protein interaction databases

STRINGC1B0C2.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

GeneID7744447.
GenomeReviewsGene locus ROP_18750 in contig AP011115_GR.
KEGGrop:ROP_18750.
PATRIC23220989. VBIRhoOpa21106_1889.

Organism-specific databases

CMRSearch...

Phylogenomic databases

OMAIFMSVFN.
ProtClustDBPRK05305.

Family and domain databases

HAMAPMF_00664. PS_decarb_type3.
[Tree]
InterProIPR003817. PS_Dcarbxylase.
IPR004428. PtdSer_deCO2ase-related.
[Graphical view]
KOK01613.
PfamPF02666. PS_Dcarbxylase. 1 hit.
[Graphical view]
TIGRFAMsTIGR00164. PS_decarb_rel. 1 hit.
ProtoNetSearch...

Entry information

Entry namePSD_RHOOB
AccessionPrimary (citable) accession number: C1B0C2
Entry history
Integrated into UniProtKB/Swiss-Prot: July 28, 2009
Last sequence update: May 26, 2009
Last modified: January 25, 2012
This is version 16 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Relevant documents

PATHWAY comments

Index of metabolic and biosynthesis pathways

SIMILARITY comments

Index of protein domains and families

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