C1B024 (C1B024_RHOOB) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Recommended name:
50S ribosomal protein L5 HAMAP MF_01333 RuleBase RU003931

Gene names

Name:	rplE HAMAP MF_01333 EMBL BAH54445.1
Ordered Locus Names:	ROP_61980

Organism

Rhodococcus opacus (strain B4) [Complete proteome] [HAMAP]

Taxonomic identifier

632772 [NCBI]

Taxonomic lineage

Bacteria › Actinobacteria › Actinobacteridae › Actinomycetales › Corynebacterineae › Nocardiaceae › Rhodococcus

Protein attributes

Sequence length	188 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Function	This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits; this bridge is implicated in subunit movement By similarity. RuleBase RU003931 This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits; this bridge is implicated in subunit movement. Contacts the P site tRNA; the 5S rRNA and some of its associated proteins might help stabilize positioning of ribosome-bound tRNAs By similarity. HAMAP MF_01333
Subunit structure	Part of the 50S ribosomal subunit; part of the 5S rRNA/L5/L18/L25 subcomplex. Contacts the 5S rRNA and the P site tRNA. Forms a bridge to the 30S subunit in the 70S ribosome By similarity. HAMAP MF_01333
Sequence similarities	Belongs to the ribosomal protein L5P family. HAMAP MF_01333 RuleBase RU003930

Ontologies

Keywords
Ligand	RNA-binding rRNA-binding HAMAP MF_01333 RuleBase RU003931 tRNA-binding HAMAP MF_01333 RuleBase RU003931
Molecular function	Ribonucleoprotein Ribosomal protein HAMAP MF_01333 RuleBase RU003930 EMBL BAH54445.1
Technical term	Complete proteome
Gene Ontology (GO)
Biological process	translation Inferred from electronic annotation. Source: HAMAP
Cellular component	ribosome Inferred from electronic annotation. Source: UniProtKB-KW
Molecular function	rRNA binding Inferred from electronic annotation. Source: HAMAP structural constituent of ribosome Inferred from electronic annotation. Source: InterPro tRNA binding Inferred from electronic annotation. Source: HAMAP
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	C1B024 [UniParc]. Last modified May 26, 2009. Version 1. Checksum: 4939A299296DF185	FASTA	188	21,165
	10 20 30 40 50 60 MTSTENKIQP RLKTRYREEI KAALNTEFDY ANVMQIPGVV KVVVNMGVGD AARDAKLING 70 80 90 100 110 120 AVNDLALITG QKPEIRKARK SIAQFKLREG MPIGARVTLR GDRMWEFLDR LVSVALPRIR 130 140 150 160 170 180 DFRGLSGNQF DGNGNYTFGL NEQSMFHEID VDKIDRPRGM DITVVTTATN NEEGRALLKH LGFPFKEN

References

[1]

"Comparison of the complete genome sequences of Rhodococcus erythropolis PR4 and Rhodococcus opacus B4." Takarada H., Sekine M., Hosoyama A., Yamada R., Fujisawa T., Omata S., Shimizu A., Tsukatani N., Tanikawa S., Fujita N., Harayama S. Submitted (MAR-2009) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].

Cross-references

Sequence databases
EMBL GenBank DDBJ	AP011115 Genomic DNA. Translation: BAH54445.1.
RefSeq	YP_002783390.1. NC_012522.1.
3D structure databases
ProteinModelPortal	C1B024.
SMR	C1B024. Positions 9-187.
ModBase	Search...
Protein-protein interaction databases
STRING	C1B024.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
GeneID	7743730.
GenomeReviews	Gene locus ROP_61980 in contig AP011115_GR.
KEGG	rop:ROP_61980.
PATRIC	23229793. VBIRhoOpa21106_6265.
Organism-specific databases
CMR	Search...
Phylogenomic databases
OMA	RQGMPIG.
ProtClustDB	PRK00010.
Family and domain databases
HAMAP	MF_01333_B. Ribosomal_L5_B. [Tree]
InterPro	IPR002132. Ribosomal_L5. IPR020930. Ribosomal_L5_bac-type. IPR022803. Ribosomal_L5_domain. [Graphical view]
Gene3D	G3DSA:3.30.1440.10. Ribosomal_L5. 1 hit.
KO	K02931.
PANTHER	PTHR11994. Ribosomal_L5. 1 hit.
Pfam	PF00281. Ribosomal_L5. 1 hit. PF00673. Ribosomal_L5_C. 1 hit. [Graphical view]
PIRSF	PIRSF002161. Ribosomal_L5. 1 hit.
SUPFAM	SSF55282. Ribosomal_L5. 1 hit.
ProtoNet	Search...

Entry information

Entry name

C1B024_RHOOB

Accession

Primary (citable) accession number: C1B024

Entry history

Integrated into UniProtKB/TrEMBL:	May 26, 2009
Last sequence update:	May 26, 2009
Last modified:	December 14, 2011
This is version 21 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)