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C1AZ84 (C1AZ84_RHOOB) Unreviewed, UniProtKB/TrEMBL

Last modified December 14, 2011. Version 22. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesRecommended name:
Deoxyribose-phosphate aldolase HAMAP MF_00114
Short name=DERA HAMAP MF_00114
EC=4.1.2.4 HAMAP MF_00114
Alternative name(s):
2-deoxy-D-ribose 5-phosphate aldolase HAMAP MF_00114
Phosphodeoxyriboaldolase HAMAP MF_00114
Gene names
Name:deoC HAMAP MF_00114 EMBL BAH50012.1
Ordered Locus Names:ROP_17650
OrganismRhodococcus opacus (strain B4) [Complete proteome] [HAMAP]
Taxonomic identifier632772 [NCBI]
Taxonomic lineageBacteria › Actinobacteria › Actinobacteridae › Actinomycetales › Corynebacterineae › Nocardiaceae › Rhodococcus

Protein attributes

Sequence length221 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Function

Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy-D-ribose 5-phosphate By similarity. HAMAP MF_00114 SAAS SAAS022979

Catalytic activity

2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. HAMAP MF_00114 SAAS SAAS022979

Pathway

Carbohydrate degradation; 2-deoxy-D-ribose 1-phosphate degradation; D-glyceraldehyde 3-phosphate and acetaldehyde from 2-deoxy-alpha-D-ribose 1-phosphate: step 2/2. HAMAP MF_00114 SAAS SAAS022979

Subcellular location

Cytoplasm By similarity HAMAP MF_00114 SAAS SAAS022979.

Sequence similarities

Belongs to the DeoC/FbaB aldolase family. DeoC type 1 subfamily. HAMAP MF_00114

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Sites

Active site1551Schiff-base intermediate with acetaldehyde By similarity HAMAP MF_00114
Active site1851 By similarity HAMAP MF_00114

Sequences

Sequence LengthMass (Da)Tools
C1AZ84 [UniParc].

Last modified May 26, 2009. Version 1.
Checksum: D6B437F0C6CB6A6B

FASTA22122,332
        10         20         30         40         50         60 
MSDVALTRSQ VADLVDHTLL KPEATTDDVT ALIDEARALG VLAVCVSPSM LPVRAPGLVT 

        70         80         90        100        110        120 
AAVVGFPSGK HHSLVKGAEA RLAVDQGAQE IDMVIDIGAA VAGDFNAVLA DVLTVREAVG 

       130        140        150        160        170        180 
DSTVLKVILE TAALSDEAIV EACRAAERAG ANFVKTSTGF HPAGGATVEA VRLMAQTVGG 

       190        200        210        220 
RMGVKASGGI RTAQAALEMI AAGATRLGLS GTRAVLDGLP D

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References

[1]"Comparison of the complete genome sequences of Rhodococcus erythropolis PR4 and Rhodococcus opacus B4."
Takarada H., Sekine M., Hosoyama A., Yamada R., Fujisawa T., Omata S., Shimizu A., Tsukatani N., Tanikawa S., Fujita N., Harayama S.
Submitted (MAR-2009) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		AP011115 Genomic DNA. Translation: BAH50012.1.
RefSeqYP_002778957.1. NC_012522.1.

3D structure databases

ProteinModelPortalC1AZ84.
ModBaseSearch...

Protein-protein interaction databases

STRINGC1AZ84.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

GeneID7747432.
GenomeReviewsGene locus ROP_17650 in contig AP011115_GR.
KEGGrop:ROP_17650.
PATRIC23220761. VBIRhoOpa21106_1775.

Organism-specific databases

CMRSearch...

Phylogenomic databases

OMACGFPSGK.
ProtClustDBPRK00507.

Family and domain databases

HAMAPMF_00114. DeoC_type1.
[Tree]
InterProIPR013785. Aldolase_TIM.
IPR011343. DeoC.
IPR002915. DeoC/AroFGH_arch.
IPR022979. Deoxyribose_phosphate_aldo_1.
[Graphical view]
Gene3DG3DSA:3.20.20.70. Aldolase_TIM. 1 hit.
KOK01619.
PANTHERPTHR10889. DeoC. 1 hit.
PfamPF01791. DeoC. 1 hit.
[Graphical view]
PIRSFPIRSF001357. DeoC. 1 hit.
TIGRFAMsTIGR00126. DeoC. 1 hit.
ProtoNetSearch...

Entry information

Entry nameC1AZ84_RHOOB
AccessionPrimary (citable) accession number: C1AZ84
Entry history
Integrated into UniProtKB/TrEMBL: May 26, 2009
Last sequence update: May 26, 2009
Last modified: December 14, 2011
This is version 22 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
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