C1AVV8 (C1AVV8_RHOOB) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Recommended name:
Ribonuclease PH HAMAP MF_00564
Short name=RNase PH HAMAP MF_00564
EC=2.7.7.56 HAMAP MF_00564

Alternative name(s):
tRNA nucleotidyltransferase HAMAP MF_00564

Gene names

Name:	rph HAMAP MF_00564 EMBL BAH49388.1
Ordered Locus Names:	ROP_11410

Organism

Rhodococcus opacus (strain B4) [Complete proteome] [HAMAP]

Taxonomic identifier

632772 [NCBI]

Taxonomic lineage

Bacteria › Actinobacteria › Actinobacteridae › Actinomycetales › Corynebacterineae › Nocardiaceae › Rhodococcus

Protein attributes

Sequence length	262 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Function	Phosphorolytic exoribonuclease that removes nucleotide residues following the -CCA terminus of tRNA and adds nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates By similarity. HAMAP MF_00564 SAAS SAAS018336
Catalytic activity	tRNA(n+1) + phosphate = tRNA(n) + a nucleoside diphosphate. HAMAP MF_00564 SAAS SAAS018336
Sequence similarities	Belongs to the RNase PH family. HAMAP MF_00564

Ontologies

Keywords
Biological process	tRNA processing HAMAP MF_00564 SAAS SAAS018336
Molecular function	Nucleotidyltransferase HAMAP MF_00564 SAAS SAAS018336 EMBL BAH49388.1 Transferase
Technical term	Complete proteome
Gene Ontology (GO)
Biological process	tRNA processing Inferred from electronic annotation. Source: HAMAP
Molecular function	tRNA binding Inferred from electronic annotation. Source: HAMAP tRNA nucleotidyltransferase activity Inferred from electronic annotation. Source: HAMAP tRNA-specific ribonuclease activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	C1AVV8 [UniParc]. Last modified May 26, 2009. Version 1. Checksum: 49A2FEAD5F330ED0	FASTA	262	27,822
	10 20 30 40 50 60 MTTREDGRAD DELREVKITR GFTTHPAGSV LVEFGNTRVM CTASVEDGVP RWRQGTGLGW 70 80 90 100 110 120 LTAEYAMLPA ATHTRSGRES VKGKVGGRTQ EISRLVGRSL RACIDLAAIG ENTIALDCDV 130 140 150 160 170 180 LQADGGTRTA AITGAYVALV DAVTYLRAAG RLADPQPISC GIAAVSVGVV DGRVRLDLPY 190 200 210 220 230 240 EEDSRAEVDM NVVATDTGTL VEIQGTGEGA TFPRSTLDKL LDSALAGCEQ LFEIQKAALE 250 260 LPYPGELPEP KVPETSKKKF GS

References

[1]

"Comparison of the complete genome sequences of Rhodococcus erythropolis PR4 and Rhodococcus opacus B4." Takarada H., Sekine M., Hosoyama A., Yamada R., Fujisawa T., Omata S., Shimizu A., Tsukatani N., Tanikawa S., Fujita N., Harayama S. Submitted (MAR-2009) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].

Cross-references

Sequence databases
EMBL GenBank DDBJ	AP011115 Genomic DNA. Translation: BAH49388.1.
RefSeq	YP_002778333.1. NC_012522.1.
3D structure databases
ModBase	Search...
Protein-protein interaction databases
STRING	C1AVV8.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
GeneID	7744199.
GenomeReviews	Gene locus ROP_11410 in contig AP011115_GR.
KEGG	rop:ROP_11410.
PATRIC	23219479. VBIRhoOpa21106_1143.
Organism-specific databases
CMR	Search...
Phylogenomic databases
OMA	MLPRATG.
ProtClustDB	PRK00173.
Family and domain databases
HAMAP	MF_00564. RNase_PH. [Tree]
InterPro	IPR001247. ExoRNase_PH_dom1. IPR015847. ExoRNase_PH_dom2. IPR020568. Ribosomal_S5_D2-typ_fold. IPR002381. RNase_PH_bac-type. IPR018336. RNase_PH_CS. [Graphical view]
KO	K00989.
Pfam	PF01138. RNase_PH. 1 hit. PF03725. RNase_PH_C. 1 hit. [Graphical view]
SUPFAM	SSF55666. 3_ExoRNase. 1 hit. SSF54211. Ribosomal_S5_D2-typ_fold. 1 hit.
TIGRFAMs	TIGR01966. RNasePH. 1 hit.
PROSITE	PS01277. RIBONUCLEASE_PH. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

C1AVV8_RHOOB

Accession

Primary (citable) accession number: C1AVV8

Entry history

Integrated into UniProtKB/TrEMBL:	May 26, 2009
Last sequence update:	May 26, 2009
Last modified:	December 14, 2011
This is version 17 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)