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Protein
Submitted name:

ATP-dependent DNA ligase LigC

Gene

ligC

Organism
Rhodococcus opacus (strain B4)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA ligase (ATP) activity Source: UniProtKB-EC

GO - Biological processi

  1. DNA ligation involved in DNA repair Source: InterPro
  2. DNA recombination Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciROPA632772:GH0Q-5211-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
ATP-dependent DNA ligase LigCImported (EC:6.5.1.1Imported)
Gene namesi
Name:ligCImported
Ordered Locus Names:ROP_51680Imported
OrganismiRhodococcus opacus (strain B4)Imported
Taxonomic identifieri632772 [NCBI]
Taxonomic lineageiBacteriaActinobacteriaActinobacteridaeActinomycetalesCorynebacterineaeNocardiaceaeRhodococcus
ProteomesiUP000002212: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi632772.ROP_51680.

Structurei

3D structure databases

ProteinModelPortaliC1AUS5.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

eggNOGiCOG1793.
HOGENOMiHOG000222508.
OMAiYRPHKSQ.
OrthoDBiEOG63NMFT.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

C1AUS5-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MDLPVMPPLQ PMLAKAASSV PAQPESGLAW SYEPKWDGFR VLVFRDGDEV
60 70 80 90 100
VLGSRGGKDL ARYFPELVRA VKDELPERCV VDGELVVPRN IDGRTRLDWE
110 120 130 140 150
SLSERIHPAE SRVTMLAEKT PAQFVAFDLL ALGDRDLSRE DFSVRRAQLV
160 170 180 190 200
DTIGGGPSCH VTAATESSAT ATEWFEAFEG AGLDGVVAKK LVGPYLPNKR
210 220 230 240 250
EMVKVKHART ADCVVIGYRP HKSQPGIGSM LLGLYDGDQM AMVGGASAFT
260 270 280 290 300
AARRIELLAE LDELRVGDDV VADGAPTRWQ SGNDRTWVPL RPERVVEVAY
310 320 330 340
DQMEGARFRH AARFLRWRPD RTPDECTFQQ LEVPVRYDLA DVLAGGS
Length:347
Mass (Da):38,304
Last modified:May 26, 2009 - v1
Checksum:i66A589E3487652BE
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AP011115 Genomic DNA. Translation: BAH53415.1.
RefSeqiYP_002782360.1. NC_012522.1.

Genome annotation databases

EnsemblBacteriaiBAH53415; BAH53415; ROP_51680.
GeneIDi7743262.
KEGGirop:ROP_51680.
PATRICi23227709. VBIRhoOpa21106_5227.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AP011115 Genomic DNA. Translation: BAH53415.1.
RefSeqiYP_002782360.1. NC_012522.1.

3D structure databases

ProteinModelPortaliC1AUS5.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi632772.ROP_51680.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiBAH53415; BAH53415; ROP_51680.
GeneIDi7743262.
KEGGirop:ROP_51680.
PATRICi23227709. VBIRhoOpa21106_5227.

Phylogenomic databases

eggNOGiCOG1793.
HOGENOMiHOG000222508.
OMAiYRPHKSQ.
OrthoDBiEOG63NMFT.

Enzyme and pathway databases

BioCyciROPA632772:GH0Q-5211-MONOMER.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "Comparison of the complete genome sequences of Rhodococcus erythropolis PR4 and Rhodococcus opacus B4."
    Takarada H., Sekine M., Hosoyama A., Yamada R., Fujisawa T., Omata S., Shimizu A., Tsukatani N., Tanikawa S., Fujita N., Harayama S.
    Submitted (MAR-2009) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: B4Imported.

Entry informationi

Entry nameiC1AUS5_RHOOB
AccessioniPrimary (citable) accession number: C1AUS5
Entry historyi
Integrated into UniProtKB/TrEMBL: May 26, 2009
Last sequence update: May 26, 2009
Last modified: March 4, 2015
This is version 34 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.