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C1AUS5 (C1AUS5_RHOOB) Unreviewed, UniProtKB/TrEMBL

Last modified November 13, 2013. Version 28. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein names
EC=6.5.1.1 EMBL BAH53415.1
Gene names
Name:ligC EMBL BAH53415.1
Ordered Locus Names:ROP_51680 EMBL BAH53415.1
OrganismRhodococcus opacus (strain B4) [Complete proteome] [HAMAP] EMBL BAH53415.1
Taxonomic identifier632772 [NCBI]
Taxonomic lineageBacteriaActinobacteriaActinobacteridaeActinomycetalesCorynebacterineaeNocardiaceaeRhodococcus

Protein attributes

Sequence length347 AA.
Sequence statusComplete.
Protein existencePredicted

Ontologies

Keywords
   Molecular functionLigase EMBL BAH53415.1
   Technical termComplete proteome
Gene Ontology (GO)
   Biological_processDNA ligation involved in DNA repair

Inferred from electronic annotation. Source: InterPro

DNA recombination

Inferred from electronic annotation. Source: InterPro

   Molecular_functionATP binding

Inferred from electronic annotation. Source: InterPro

DNA ligase (ATP) activity

Inferred from electronic annotation. Source: UniProtKB-EC

Complete GO annotation...

Sequences

Sequence LengthMass (Da)Tools
C1AUS5 [UniParc].

Last modified May 26, 2009. Version 1.
Checksum: 66A589E3487652BE

FASTA34738,304
        10         20         30         40         50         60 
MDLPVMPPLQ PMLAKAASSV PAQPESGLAW SYEPKWDGFR VLVFRDGDEV VLGSRGGKDL 

        70         80         90        100        110        120 
ARYFPELVRA VKDELPERCV VDGELVVPRN IDGRTRLDWE SLSERIHPAE SRVTMLAEKT 

       130        140        150        160        170        180 
PAQFVAFDLL ALGDRDLSRE DFSVRRAQLV DTIGGGPSCH VTAATESSAT ATEWFEAFEG 

       190        200        210        220        230        240 
AGLDGVVAKK LVGPYLPNKR EMVKVKHART ADCVVIGYRP HKSQPGIGSM LLGLYDGDQM 

       250        260        270        280        290        300 
AMVGGASAFT AARRIELLAE LDELRVGDDV VADGAPTRWQ SGNDRTWVPL RPERVVEVAY 

       310        320        330        340 
DQMEGARFRH AARFLRWRPD RTPDECTFQQ LEVPVRYDLA DVLAGGS 

« Hide

References

[1]"Comparison of the complete genome sequences of Rhodococcus erythropolis PR4 and Rhodococcus opacus B4."
Takarada H., Sekine M., Hosoyama A., Yamada R., Fujisawa T., Omata S., Shimizu A., Tsukatani N., Tanikawa S., Fujita N., Harayama S.
Submitted (MAR-2009) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: B4 EMBL BAH53415.1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
AP011115 Genomic DNA. Translation: BAH53415.1.
RefSeqYP_002782360.1. NC_012522.1.

3D structure databases

ProteinModelPortalC1AUS5.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING632772.ROP_51680.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaBAH53415; BAH53415; ROP_51680.
GeneID7743262.
KEGGrop:ROP_51680.
PATRIC23227709. VBIRhoOpa21106_5227.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG1793.
HOGENOMHOG000222508.
KOK01971.
OMAYRPHKSQ.
OrthoDBEOG63NMFT.
ProtClustDBPRK08224.

Enzyme and pathway databases

BioCycROPA632772:GH0Q-5211-MONOMER.

Family and domain databases

Gene3D2.40.50.140. 1 hit.
InterProIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
[Graphical view]
SUPFAMSSF50249. SSF50249. 1 hit.
PROSITEPS00697. DNA_LIGASE_A1. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameC1AUS5_RHOOB
AccessionPrimary (citable) accession number: C1AUS5
Entry history
Integrated into UniProtKB/TrEMBL: May 26, 2009
Last sequence update: May 26, 2009
Last modified: November 13, 2013
This is version 28 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)