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C1ATU5 (C1ATU5_RHOOB) Unreviewed, UniProtKB/TrEMBL

Last modified April 16, 2014. Version 31. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein names
EC=6.5.1.1 EMBL BAH53359.1
Gene names
Name:ligD EMBL BAH53359.1
Ordered Locus Names:ROP_51120 EMBL BAH53359.1
OrganismRhodococcus opacus (strain B4) [Complete proteome] [HAMAP] EMBL BAH53359.1
Taxonomic identifier632772 [NCBI]
Taxonomic lineageBacteriaActinobacteriaActinobacteridaeActinomycetalesCorynebacterineaeNocardiaceaeRhodococcus

Protein attributes

Sequence length758 AA.
Sequence statusComplete.
Protein existencePredicted

Ontologies

Sequences

Sequence LengthMass (Da)Tools
C1ATU5 [UniParc].

Last modified May 26, 2009. Version 1.
Checksum: 2593A15C98DF93C5

FASTA75883,891
        10         20         30         40         50         60 
MATAGTRQLT VDGHRLSLTN LGKVLYPESG TVKGEVIDYY SRIAPAMLPH VVDRPATRKR 

        70         80         90        100        110        120 
WPNGVDSEPF FEKNLAASAP GWLERRALEH SDRSVHYPLL NSVAALVWAG QQAALELHVP 

       130        140        150        160        170        180 
QWRFDGSHRG PATRIVFDLD PGPGVGLVEC AEVARAVRDL VANLGWTAYP VTSGSKGIHL 

       190        200        210        220        230        240 
YVPLDRKLDG SGASTVAKQV ATGLEKLRPE LVTATMAKSV RAGKVFVDWS QNNPSKTTIA 

       250        260        270        280        290        300 
PYSLRGRSEP YVAAPRSWDE LDDPGLRQLR FEEVLERWES DGDLLAGLDP PIEDDTALAE 

       310        320        330        340        350        360 
YRRKRDPGRT PEPMPHTVQP GAGNSFVIQE HHARRLHYDL RLERDGVLVS WAVPKNVPTT 

       370        380        390        400        410        420 
TGENRLAVHT EDHPLEYLTF SGSIPKGEYG GGQMTIWDTG TYDTEKWRDD EVIVQLHGEQ 

       430        440        450        460        470        480 
VEGRFALIRT KGDQWLMHLM KDQSPGGSRS SELPRGLSPM LASPGTLDGL GADEWAFEGK 

       490        500        510        520        530        540 
WDGIRVIAEI SGGELKMTSR AGNDKTRDYA QLGWLADSLE DHEVVLDGEV VAFDERGVAN 

       550        560        570        580        590        600 
FGLLQQGNEP HFLAFDVLYL DGVSLLRKKY TDRRRVLEAL AAKVDDLVVP PQLHGSAQEA 

       610        620        630        640        650        660 
LDESRRKGWE GVVAKRRESV YLPGKRGSSW IKVKNWRTQE AVIGGWRRGQ GGRSSGIGSV 

       670        680        690        700        710        720 
LLGVPEDEGL RYIGRVGTGF TERDLQELAA TLGPLETDTS PFVEDLPTAD RKGAVWVTPT 

       730        740        750 
LVAEVRFMDW TGSRRLRHPS WRGLRNDKAP EDVEVESS 

« Hide

References

[1]"Comparison of the complete genome sequences of Rhodococcus erythropolis PR4 and Rhodococcus opacus B4."
Takarada H., Sekine M., Hosoyama A., Yamada R., Fujisawa T., Omata S., Shimizu A., Tsukatani N., Tanikawa S., Fujita N., Harayama S.
Submitted (MAR-2009) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: B4 EMBL BAH53359.1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
AP011115 Genomic DNA. Translation: BAH53359.1.
RefSeqYP_002782304.1. NC_012522.1.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING632772.ROP_51120.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaBAH53359; BAH53359; ROP_51120.
GeneID7743213.
KEGGrop:ROP_51120.
PATRIC23227595. VBIRhoOpa21106_5170.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG3285.
HOGENOMHOG000222509.
KOK01971.
OMASKGIHLY.
OrthoDBEOG661H49.
ProtClustDBPRK09632.

Enzyme and pathway databases

BioCycROPA632772:GH0Q-5155-MONOMER.

Family and domain databases

Gene3D2.40.50.140. 1 hit.
InterProIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR002755. DNA_primase_S.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF01896. DNA_primase_S. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMSSF50249. SSF50249. 1 hit.
TIGRFAMsTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
PROSITEPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameC1ATU5_RHOOB
AccessionPrimary (citable) accession number: C1ATU5
Entry history
Integrated into UniProtKB/TrEMBL: May 26, 2009
Last sequence update: May 26, 2009
Last modified: April 16, 2014
This is version 31 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)