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C1ATU5

- C1ATU5_RHOOB

UniProt

C1ATU5 - C1ATU5_RHOOB

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Protein
Submitted name:

ATP-dependent DNA ligase LigD

Gene

ligD

Organism
Rhodococcus opacus (strain B4)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA ligase (ATP) activity Source: UniProtKB-EC
  3. DNA primase activity Source: InterPro

GO - Biological processi

  1. DNA recombination Source: InterPro
  2. DNA repair Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciROPA632772:GH0Q-5155-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
ATP-dependent DNA ligase LigDImported (EC:6.5.1.1Imported)
Gene namesi
Name:ligDImported
Ordered Locus Names:ROP_51120Imported
OrganismiRhodococcus opacus (strain B4)Imported
Taxonomic identifieri632772 [NCBI]
Taxonomic lineageiBacteriaActinobacteriaActinobacteridaeActinomycetalesCorynebacterineaeNocardiaceaeRhodococcus
ProteomesiUP000002212: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi632772.ROP_51120.

Family & Domainsi

Phylogenomic databases

eggNOGiCOG3285.
HOGENOMiHOG000222509.
KOiK01971.
OMAiSKGIHLY.
OrthoDBiEOG661H49.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR002755. DNA_primase_S.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF01896. DNA_primase_S. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

C1ATU5-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MATAGTRQLT VDGHRLSLTN LGKVLYPESG TVKGEVIDYY SRIAPAMLPH
60 70 80 90 100
VVDRPATRKR WPNGVDSEPF FEKNLAASAP GWLERRALEH SDRSVHYPLL
110 120 130 140 150
NSVAALVWAG QQAALELHVP QWRFDGSHRG PATRIVFDLD PGPGVGLVEC
160 170 180 190 200
AEVARAVRDL VANLGWTAYP VTSGSKGIHL YVPLDRKLDG SGASTVAKQV
210 220 230 240 250
ATGLEKLRPE LVTATMAKSV RAGKVFVDWS QNNPSKTTIA PYSLRGRSEP
260 270 280 290 300
YVAAPRSWDE LDDPGLRQLR FEEVLERWES DGDLLAGLDP PIEDDTALAE
310 320 330 340 350
YRRKRDPGRT PEPMPHTVQP GAGNSFVIQE HHARRLHYDL RLERDGVLVS
360 370 380 390 400
WAVPKNVPTT TGENRLAVHT EDHPLEYLTF SGSIPKGEYG GGQMTIWDTG
410 420 430 440 450
TYDTEKWRDD EVIVQLHGEQ VEGRFALIRT KGDQWLMHLM KDQSPGGSRS
460 470 480 490 500
SELPRGLSPM LASPGTLDGL GADEWAFEGK WDGIRVIAEI SGGELKMTSR
510 520 530 540 550
AGNDKTRDYA QLGWLADSLE DHEVVLDGEV VAFDERGVAN FGLLQQGNEP
560 570 580 590 600
HFLAFDVLYL DGVSLLRKKY TDRRRVLEAL AAKVDDLVVP PQLHGSAQEA
610 620 630 640 650
LDESRRKGWE GVVAKRRESV YLPGKRGSSW IKVKNWRTQE AVIGGWRRGQ
660 670 680 690 700
GGRSSGIGSV LLGVPEDEGL RYIGRVGTGF TERDLQELAA TLGPLETDTS
710 720 730 740 750
PFVEDLPTAD RKGAVWVTPT LVAEVRFMDW TGSRRLRHPS WRGLRNDKAP

EDVEVESS
Length:758
Mass (Da):83,891
Last modified:May 26, 2009 - v1
Checksum:i2593A15C98DF93C5
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AP011115 Genomic DNA. Translation: BAH53359.1.
RefSeqiWP_015888865.1. NC_012522.1.
YP_002782304.1. NC_012522.1.

Genome annotation databases

EnsemblBacteriaiBAH53359; BAH53359; ROP_51120.
GeneIDi7743213.
KEGGirop:ROP_51120.
PATRICi23227595. VBIRhoOpa21106_5170.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AP011115 Genomic DNA. Translation: BAH53359.1 .
RefSeqi WP_015888865.1. NC_012522.1.
YP_002782304.1. NC_012522.1.

3D structure databases

ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 632772.ROP_51120.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai BAH53359 ; BAH53359 ; ROP_51120 .
GeneIDi 7743213.
KEGGi rop:ROP_51120.
PATRICi 23227595. VBIRhoOpa21106_5170.

Phylogenomic databases

eggNOGi COG3285.
HOGENOMi HOG000222509.
KOi K01971.
OMAi SKGIHLY.
OrthoDBi EOG661H49.

Enzyme and pathway databases

BioCyci ROPA632772:GH0Q-5155-MONOMER.

Family and domain databases

Gene3Di 2.40.50.140. 1 hit.
InterProi IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR002755. DNA_primase_S.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
[Graphical view ]
Pfami PF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF01896. DNA_primase_S. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view ]
SUPFAMi SSF50249. SSF50249. 1 hit.
TIGRFAMsi TIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
PROSITEi PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. "Comparison of the complete genome sequences of Rhodococcus erythropolis PR4 and Rhodococcus opacus B4."
    Takarada H., Sekine M., Hosoyama A., Yamada R., Fujisawa T., Omata S., Shimizu A., Tsukatani N., Tanikawa S., Fujita N., Harayama S.
    Submitted (MAR-2009) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: B4Imported.

Entry informationi

Entry nameiC1ATU5_RHOOB
AccessioniPrimary (citable) accession number: C1ATU5
Entry historyi
Integrated into UniProtKB/TrEMBL: May 26, 2009
Last sequence update: May 26, 2009
Last modified: October 29, 2014
This is version 34 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteomeImported

External Data

Dasty 3