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C1ATU5

- C1ATU5_RHOOB

UniProt

C1ATU5 - C1ATU5_RHOOB

Protein
Submitted name:

ATP-dependent DNA ligase LigD

Gene

ligD

Organism
Rhodococcus opacus (strain B4)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi
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    • History
      Entry version 33 (01 Oct 2014)
      Sequence version 1 (26 May 2009)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. ATP binding Source: InterPro
    2. DNA ligase (ATP) activity Source: UniProtKB-EC
    3. DNA primase activity Source: InterPro

    GO - Biological processi

    1. DNA recombination Source: InterPro
    2. DNA repair Source: InterPro

    Keywords - Molecular functioni

    LigaseImported

    Enzyme and pathway databases

    BioCyciROPA632772:GH0Q-5155-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    ATP-dependent DNA ligase LigDImported (EC:6.5.1.1Imported)
    Gene namesi
    Name:ligDImported
    Ordered Locus Names:ROP_51120Imported
    OrganismiRhodococcus opacus (strain B4)Imported
    Taxonomic identifieri632772 [NCBI]
    Taxonomic lineageiBacteriaActinobacteriaActinobacteridaeActinomycetalesCorynebacterineaeNocardiaceaeRhodococcus
    ProteomesiUP000002212: Chromosome

    Interactioni

    Protein-protein interaction databases

    STRINGi632772.ROP_51120.

    Family & Domainsi

    Phylogenomic databases

    eggNOGiCOG3285.
    HOGENOMiHOG000222509.
    KOiK01971.
    OMAiSKGIHLY.
    OrthoDBiEOG661H49.

    Family and domain databases

    Gene3Di2.40.50.140. 1 hit.
    InterProiIPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR014146. DNA_pol_LigD_ligase_dom.
    IPR002755. DNA_primase_S.
    IPR014144. LigD_PE_domain.
    IPR014145. LigD_pol.
    IPR012340. NA-bd_OB-fold.
    [Graphical view]
    PfamiPF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF01896. DNA_primase_S. 1 hit.
    PF13298. LigD_N. 1 hit.
    [Graphical view]
    SUPFAMiSSF50249. SSF50249. 1 hit.
    TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
    TIGR02778. ligD_pol. 1 hit.
    TIGR02779. NHEJ_ligase_lig. 1 hit.
    PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    C1ATU5-1 [UniParc]FASTAAdd to Basket

    « Hide

    MATAGTRQLT VDGHRLSLTN LGKVLYPESG TVKGEVIDYY SRIAPAMLPH    50
    VVDRPATRKR WPNGVDSEPF FEKNLAASAP GWLERRALEH SDRSVHYPLL 100
    NSVAALVWAG QQAALELHVP QWRFDGSHRG PATRIVFDLD PGPGVGLVEC 150
    AEVARAVRDL VANLGWTAYP VTSGSKGIHL YVPLDRKLDG SGASTVAKQV 200
    ATGLEKLRPE LVTATMAKSV RAGKVFVDWS QNNPSKTTIA PYSLRGRSEP 250
    YVAAPRSWDE LDDPGLRQLR FEEVLERWES DGDLLAGLDP PIEDDTALAE 300
    YRRKRDPGRT PEPMPHTVQP GAGNSFVIQE HHARRLHYDL RLERDGVLVS 350
    WAVPKNVPTT TGENRLAVHT EDHPLEYLTF SGSIPKGEYG GGQMTIWDTG 400
    TYDTEKWRDD EVIVQLHGEQ VEGRFALIRT KGDQWLMHLM KDQSPGGSRS 450
    SELPRGLSPM LASPGTLDGL GADEWAFEGK WDGIRVIAEI SGGELKMTSR 500
    AGNDKTRDYA QLGWLADSLE DHEVVLDGEV VAFDERGVAN FGLLQQGNEP 550
    HFLAFDVLYL DGVSLLRKKY TDRRRVLEAL AAKVDDLVVP PQLHGSAQEA 600
    LDESRRKGWE GVVAKRRESV YLPGKRGSSW IKVKNWRTQE AVIGGWRRGQ 650
    GGRSSGIGSV LLGVPEDEGL RYIGRVGTGF TERDLQELAA TLGPLETDTS 700
    PFVEDLPTAD RKGAVWVTPT LVAEVRFMDW TGSRRLRHPS WRGLRNDKAP 750
    EDVEVESS 758
    Length:758
    Mass (Da):83,891
    Last modified:May 26, 2009 - v1
    Checksum:i2593A15C98DF93C5
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AP011115 Genomic DNA. Translation: BAH53359.1.
    RefSeqiYP_002782304.1. NC_012522.1.

    Genome annotation databases

    EnsemblBacteriaiBAH53359; BAH53359; ROP_51120.
    GeneIDi7743213.
    KEGGirop:ROP_51120.
    PATRICi23227595. VBIRhoOpa21106_5170.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AP011115 Genomic DNA. Translation: BAH53359.1 .
    RefSeqi YP_002782304.1. NC_012522.1.

    3D structure databases

    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 632772.ROP_51120.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai BAH53359 ; BAH53359 ; ROP_51120 .
    GeneIDi 7743213.
    KEGGi rop:ROP_51120.
    PATRICi 23227595. VBIRhoOpa21106_5170.

    Phylogenomic databases

    eggNOGi COG3285.
    HOGENOMi HOG000222509.
    KOi K01971.
    OMAi SKGIHLY.
    OrthoDBi EOG661H49.

    Enzyme and pathway databases

    BioCyci ROPA632772:GH0Q-5155-MONOMER.

    Family and domain databases

    Gene3Di 2.40.50.140. 1 hit.
    InterProi IPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR014146. DNA_pol_LigD_ligase_dom.
    IPR002755. DNA_primase_S.
    IPR014144. LigD_PE_domain.
    IPR014145. LigD_pol.
    IPR012340. NA-bd_OB-fold.
    [Graphical view ]
    Pfami PF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF01896. DNA_primase_S. 1 hit.
    PF13298. LigD_N. 1 hit.
    [Graphical view ]
    SUPFAMi SSF50249. SSF50249. 1 hit.
    TIGRFAMsi TIGR02777. LigD_PE_dom. 1 hit.
    TIGR02778. ligD_pol. 1 hit.
    TIGR02779. NHEJ_ligase_lig. 1 hit.
    PROSITEi PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Comparison of the complete genome sequences of Rhodococcus erythropolis PR4 and Rhodococcus opacus B4."
      Takarada H., Sekine M., Hosoyama A., Yamada R., Fujisawa T., Omata S., Shimizu A., Tsukatani N., Tanikawa S., Fujita N., Harayama S.
      Submitted (MAR-2009) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: B4Imported.

    Entry informationi

    Entry nameiC1ATU5_RHOOB
    AccessioniPrimary (citable) accession number: C1ATU5
    Entry historyi
    Integrated into UniProtKB/TrEMBL: May 26, 2009
    Last sequence update: May 26, 2009
    Last modified: October 1, 2014
    This is version 33 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteomeImported

    External Data

    Dasty 3