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C0ZXR9 (RIMM_RHOE4) Reviewed, UniProtKB/Swiss-Prot

Last modified January 25, 2012. Version 19. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (1) | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesRecommended name:
Ribosome maturation factor rimM
Gene names
Name:rimM
Ordered Locus Names:RER_24460
OrganismRhodococcus erythropolis (strain PR4 / NBRC 100887) [Complete proteome] [HAMAP]
Taxonomic identifier234621 [NCBI]
Taxonomic lineageBacteria › Actinobacteria › Actinobacteridae › Actinomycetales › Corynebacterineae › Nocardiaceae › Rhodococcus

Protein attributes

Sequence length190 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Function

An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after rbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes By similarity. HAMAP MF_00014

Subunit structure

Binds ribosomal protein S19 By similarity. HAMAP MF_00014

Subcellular location

Cytoplasm By similarity HAMAP MF_00014.

Domain

The PRC barrel domain binds ribosomal protein S19 By similarity. HAMAP MF_00014

Sequence similarities

Belongs to the rimM family.

Contains 1 PRC barrel domain.

Ontologies

Keywords
   Biological processRibosome biogenesis
   Cellular componentCytoplasm
   Molecular functionChaperone
   Technical termComplete proteome
Gene Ontology (GO)
   Biological processrRNA processing

Inferred from electronic annotation. Source: InterPro

   Cellular componentribosome

Inferred from electronic annotation. Source: InterPro

   Molecular functionribosome binding

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 190190Ribosome maturation factor rimM HAMAP MF_00014
PRO_1000201812

Regions

Domain95 – 17177PRC barrel

Sequences

Sequence LengthMass (Da)Tools
C0ZXR9 [UniParc].

Last modified May 26, 2009. Version 1.
Checksum: 303849164E802AAF

FASTA19020,430
        10         20         30         40         50         60 
MELVVGRVAK SHGIKGELVV EVRTDEPEDR FAVGSVLRGR KPRESTLKSY TVEAARDHSG 

        70         80         90        100        110        120 
RLLLRLEGVS DRGDADALRG TLFVIDSSEL EPSDDPDEFY DHELEGLKVV LTDGTEVGSV 

       130        140        150        160        170        180 
IEVLHSAAGE LLSIRRTGET SGELLIPFVA AIVTSVSIAD GVVMIEPPEG LLDPDFGDKS 

       190 
NSDNSNSDND

« Hide

References

[1]"Comparison of the complete genome sequences of Rhodococcus erythropolis PR4 and Rhodococcus opacus B4."
Takarada H., Sekine M., Hosoyama A., Yamada R., Fujisawa T., Omata S., Shimizu A., Tsukatani N., Tanikawa S., Fujita N., Harayama S.
Submitted (MAR-2005) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: PR4 / NBRC 100887.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		AP008957 Genomic DNA. Translation: BAH33154.1.
RefSeqYP_002765893.1. NC_012490.1.

3D structure databases

ProteinModelPortalC0ZXR9.
ModBaseSearch...

Protein-protein interaction databases

STRINGC0ZXR9.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

GeneID7709936.
GenomeReviewsGene locus RER_24460 in contig AP008957_GR.
KEGGrer:RER_24460.
PATRIC23191318. VBIRhoEry66701_2951.

Organism-specific databases

CMRSearch...

Phylogenomic databases

OMAPDEFYDH.
ProtClustDBPRK00122.

Family and domain databases

HAMAPMF_00014. Ribosome_mat_RimM.
[Tree]
InterProIPR011961. 16S_RimM.
IPR007903. PRC_barrel.
IPR011033. PRC_barrell-like.
IPR002676. RimM.
IPR009000. Transl_elong_init/rib_B-barrel.
[Graphical view]
Gene3DG3DSA:2.40.30.60. G3DSA:2.40.30.60. 1 hit.
KOK02860.
PfamPF05239. PRC. 1 hit.
PF01782. RimM. 1 hit.
[Graphical view]
SUPFAMSSF50346. PRCH_cytoplasmic. 1 hit.
SSF50447. Translat_factor. 1 hit.
TIGRFAMsTIGR02273. 16S_RimM. 1 hit.
ProtoNetSearch...

Entry information

Entry nameRIMM_RHOE4
AccessionPrimary (citable) accession number: C0ZXR9
Entry history
Integrated into UniProtKB/Swiss-Prot: September 22, 2009
Last sequence update: May 26, 2009
Last modified: January 25, 2012
This is version 19 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Relevant documents

SIMILARITY comments

Index of protein domains and families

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