C0ZXD5 (C0ZXD5_RHOE4) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Recommended name:
SsrA-binding protein HAMAP MF_00023

Gene names

Name:	smpB HAMAP MF_00023 EMBL BAH33020.1
Ordered Locus Names:	RER_23120

Organism

Rhodococcus erythropolis (strain PR4 / NBRC 100887) [Complete proteome] [HAMAP]

Taxonomic identifier

234621 [NCBI]

Taxonomic lineage

Bacteria › Actinobacteria › Actinobacteridae › Actinomycetales › Corynebacterineae › Nocardiaceae › Rhodococcus

Protein attributes

Sequence length	157 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Function	Binds specifically to the SsrA RNA (tmRNA) and is required for stable association of SsrA with ribosomes By similarity. HAMAP MF_00023
Subcellular location	Cytoplasm By similarity HAMAP MF_00023.
Sequence similarities	Belongs to the SmpB family. HAMAP MF_00023

Ontologies

Keywords
Cellular component	Cytoplasm HAMAP MF_00023
Ligand	RNA-binding HAMAP MF_00023
Technical term	Complete proteome
Gene Ontology (GO)
Cellular component	cytoplasm Inferred from electronic annotation. Source: UniProtKB-SubCell
Molecular function	RNA binding Inferred from electronic annotation. Source: HAMAP
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	C0ZXD5 [UniParc]. Last modified May 26, 2009. Version 1. Checksum: 875FAB1E204CAC50	FASTA	157	18,086
	10 20 30 40 50 60 MKEKGRKVIA TNRKARHNYT IIDTYEAGIA LVGTEVKSLR EGKASLVDAF ATVDNGEVWL 70 80 90 100 110 120 RSLHIPEYTQ GTWNNHSPRR TRKLLLHKRE IEHLVGKTRE GNQTLVPLSM YFNDGKVKVE 130 140 150 LALAKGKQDY DKRQDMAKRT AEREVTRELG RRIKGMR

References

[1]

"Comparison of the complete genome sequences of Rhodococcus erythropolis PR4 and Rhodococcus opacus B4." Takarada H., Sekine M., Hosoyama A., Yamada R., Fujisawa T., Omata S., Shimizu A., Tsukatani N., Tanikawa S., Fujita N., Harayama S. Submitted (MAR-2005) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: PR4 / NBRC 100887.

Cross-references

Sequence databases
EMBL GenBank DDBJ	AP008957 Genomic DNA. Translation: BAH33020.1.
RefSeq	YP_002765759.1. NC_012490.1.
3D structure databases
ModBase	Search...
Protein-protein interaction databases
STRING	C0ZXD5.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
GeneID	7713135.
GenomeReviews	Gene locus RER_23120 in contig AP008957_GR.
KEGG	rer:RER_23120.
PATRIC	23191038. VBIRhoEry66701_2814.
Organism-specific databases
CMR	Search...
Phylogenomic databases
OMA	EKYEAGI.
ProtClustDB	PRK05422.
Family and domain databases
HAMAP	MF_00023. SmpB. [Tree]
InterPro	IPR023620. SmpB. IPR000037. SsrA-bd_prot. IPR020081. SsrA-bd_prot_CS. [Graphical view]
Gene3D	G3DSA:2.40.280.10. SmpB. 1 hit.
KO	K03664.
Pfam	PF01668. SmpB. 1 hit. [Graphical view]
ProDom	PD004488. SmpB. 1 hit. [Graphical view] [Entries sharing at least one domain]
SUPFAM	SSF74982. SmpB. 1 hit.
TIGRFAMs	TIGR00086. SmpB. 1 hit.
PROSITE	PS01317. SSRP. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

C0ZXD5_RHOE4

Accession

Primary (citable) accession number: C0ZXD5

Entry history

Integrated into UniProtKB/TrEMBL:	May 26, 2009
Last sequence update:	May 26, 2009
Last modified:	December 14, 2011
This is version 19 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)