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C0ZW37 (C0ZW37_RHOE4) Unreviewed, UniProtKB/TrEMBL

Last modified December 14, 2011. Version 21. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesRecommended name:
50S ribosomal protein L5 HAMAP MF_01333 RuleBase RU003931
Gene names
Name:rplE HAMAP MF_01333 EMBL BAH32572.1
Ordered Locus Names:RER_18640
OrganismRhodococcus erythropolis (strain PR4 / NBRC 100887) [Complete proteome] [HAMAP]
Taxonomic identifier234621 [NCBI]
Taxonomic lineageBacteria › Actinobacteria › Actinobacteridae › Actinomycetales › Corynebacterineae › Nocardiaceae › Rhodococcus

Protein attributes

Sequence length188 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Function

This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits; this bridge is implicated in subunit movement By similarity. RuleBase RU003931

This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits; this bridge is implicated in subunit movement. Contacts the P site tRNA; the 5S rRNA and some of its associated proteins might help stabilize positioning of ribosome-bound tRNAs By similarity. HAMAP MF_01333

Subunit structure

Part of the 50S ribosomal subunit; part of the 5S rRNA/L5/L18/L25 subcomplex. Contacts the 5S rRNA and the P site tRNA. Forms a bridge to the 30S subunit in the 70S ribosome By similarity. HAMAP MF_01333

Sequence similarities

Belongs to the ribosomal protein L5P family. HAMAP MF_01333 RuleBase RU003930

Sequences

Sequence LengthMass (Da)Tools
C0ZW37 [UniParc].

Last modified May 26, 2009. Version 1.
Checksum: 0CD23AC2FCDF5A35

FASTA18821,148
        10         20         30         40         50         60 
MTSTENKVQP RLKARYRAEI KDALNSEFDY SNVMQIPGVV KVVVNMGVGD AARDAKLING 

        70         80         90        100        110        120 
AVHDLSLITG QKPEIRKARK SIAQFKLREG MPIGARVTLR GDRMWEFLDR LVSVALPRIR 

       130        140        150        160        170        180 
DFRGLSGNQF DGNGNYTFGL NEQSMFHEID VDKIDRPRGM DITVVTTATN NEEGRALLKH 


LGFPFKEN

« Hide

References

[1]"Comparison of the complete genome sequences of Rhodococcus erythropolis PR4 and Rhodococcus opacus B4."
Takarada H., Sekine M., Hosoyama A., Yamada R., Fujisawa T., Omata S., Shimizu A., Tsukatani N., Tanikawa S., Fujita N., Harayama S.
Submitted (MAR-2005) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: PR4 / NBRC 100887.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		AP008957 Genomic DNA. Translation: BAH32572.1.
RefSeqYP_002765311.1. NC_012490.1.

3D structure databases

ModBaseSearch...

Protein-protein interaction databases

STRINGC0ZW37.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

GeneID7712501.
GenomeReviewsGene locus RER_18640 in contig AP008957_GR.
KEGGrer:RER_18640.
PATRIC23190124. VBIRhoEry66701_2359.

Organism-specific databases

CMRSearch...

Phylogenomic databases

OMARQGMPIG.
ProtClustDBPRK00010.

Family and domain databases

HAMAPMF_01333_B. Ribosomal_L5_B.
[Tree]
InterProIPR002132. Ribosomal_L5.
IPR020930. Ribosomal_L5_bac-type.
IPR022803. Ribosomal_L5_domain.
[Graphical view]
Gene3DG3DSA:3.30.1440.10. Ribosomal_L5. 1 hit.
KOK02931.
PANTHERPTHR11994. Ribosomal_L5. 1 hit.
PfamPF00281. Ribosomal_L5. 1 hit.
PF00673. Ribosomal_L5_C. 1 hit.
[Graphical view]
PIRSFPIRSF002161. Ribosomal_L5. 1 hit.
SUPFAMSSF55282. Ribosomal_L5. 1 hit.
ProtoNetSearch...

Entry information

Entry nameC0ZW37_RHOE4
AccessionPrimary (citable) accession number: C0ZW37
Entry history
Integrated into UniProtKB/TrEMBL: May 26, 2009
Last sequence update: May 26, 2009
Last modified: December 14, 2011
This is version 21 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
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