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C0ZMH2 (C0ZMH2_RHOE4) Unreviewed, UniProtKB/TrEMBL

Last modified May 1, 2013. Version 26. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesSubmitted name:
ATP-dependent DNA ligase LigD EMBL BAH35230.1
EC=6.5.1.1 EMBL BAH35230.1
Gene names
Name:ligD EMBL BAH35230.1
Ordered Locus Names:RER_45220 EMBL BAH35230.1
OrganismRhodococcus erythropolis (strain PR4 / NBRC 100887) [Complete proteome] [HAMAP] EMBL BAH35230.1
Taxonomic identifier234621 [NCBI]
Taxonomic lineageBacteria › Actinobacteria › Actinobacteridae › Actinomycetales › Corynebacterineae › Nocardiaceae › Rhodococcus ›

Protein attributes

Sequence length758 AA.
Sequence statusComplete.
Protein existencePredicted

Sequences

Sequence LengthMass (Da)Tools
C0ZMH2 [UniParc].

Last modified May 26, 2009. Version 1.
Checksum: 5D32B99575C78AE1

FASTA75883,257
        10         20         30         40         50         60 
MATTDRGQIT LDGTTVSVTN LGKIFYPESG TTKAEVIDYY TRIAAVMLPH VVGRPGTRKR 

        70         80         90        100        110        120 
WPNGVDGQSF FEKNLASSAP QWLTRASLQH SDRVVTYPIF DSVASLAWLG QQAALELHVP 

       130        140        150        160        170        180 
QWRFDGSERG PATRLVFDLD PGEGVGLAEC AEVARSIRDL VATLGWTAYP VTSGSKGIHL 

       190        200        210        220        230        240 
YVPLDRALDG SGASTVAKQI ATGLEKLHPD LVTATMARNV RAGKIFVDWS QNNAAKTTIA 

       250        260        270        280        290        300 
PYSMRGRDQP YVAAPRSWDE LDDPKLRHLL FDEVLERVES DGDLLGDLDP PVSAAVADTL 

       310        320        330        340        350        360 
AHYRNKRSAD RTPEPIPAAV ANETAGNTFV IQEHHARRLH YDVRLERDGV LVSWAVPKGV 

       370        380        390        400        410        420 
PTSAGENRLA VHTEDHPLEY ATFAGTIPKG EYGGGSMTIW DSGTYETEKW REDEVIVRLS 

       430        440        450        460        470        480 
GERVQGRFAL IRTKGDQWLM HLMKDQNASF GTEFPKNLEP MLATAGTLEG LDPQEWAFEG 

       490        500        510        520        530        540 
KWDGIRVILE YRSGTMSLRS RAGNDKTRDY PALAGLAAVL DGHDVVLDGE VVAYNDAGVT 

       550        560        570        580        590        600 
DFGLLQRGGE PVFLAFDLLY LDGVSLLRKS YSDRRTVLNA LAGKVGELEV PPQIEGTAEN 

       610        620        630        640        650        660 
ALEVSTDAGW EGIVAKRRAS VYLPGRRGSS WIKVKNWRTQ EVVIGGWRTG QGNRAQGIGA 

       670        680        690        700        710        720 
LLMGIPGEDG LTYVGRVGTG FSDRDLESLL AVLEPLRQKE SPFEEELPAD DRKGAVWVRP 

       730        740        750 
ELVGEARFMD WTATGRLRHP SWRGLREDKK PGDVTGRE

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References

[1]"Comparison of the complete genome sequences of Rhodococcus erythropolis PR4 and Rhodococcus opacus B4."
Takarada H., Sekine M., Hosoyama A., Yamada R., Fujisawa T., Omata S., Shimizu A., Tsukatani N., Tanikawa S., Fujita N., Harayama S.
Submitted (MAR-2005) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: PR4 / NBRC 100887.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		AP008957 Genomic DNA. Translation: BAH35230.1.
RefSeqYP_002767969.1. NC_012490.1.

3D structure databases

ModBaseSearch...

Protein-protein interaction databases

STRING234621.RER_45220.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaBAH35230; BAH35230; RER_45220.
GeneID7713323.
KEGGrer:RER_45220.
PATRIC23195635. VBIRhoEry66701_5072.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG3285.
HOGENOMHOG000222509.
KOK01971.
OMASGSKGIH.
ProtClustDBPRK09632.

Enzyme and pathway databases

BioCycRERY234621:GHDE-5471-MONOMER.

Family and domain databases

Gene3D2.40.50.140. 1 hit.
InterProIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR002755. DNA_primase_S.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF01896. DNA_primase_S. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMSSF50249. Nucleic_acid_OB. 1 hit.
TIGRFAMsTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
PROSITEPS00697. DNA_LIGASE_A1. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameC0ZMH2_RHOE4
AccessionPrimary (citable) accession number: C0ZMH2
Entry history
Integrated into UniProtKB/TrEMBL: May 26, 2009
Last sequence update: May 26, 2009
Last modified: May 1, 2013
This is version 26 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
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