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Protein
Submitted name:

ATP-dependent DNA ligase LigD

Gene

ligD

Organism
Rhodococcus erythropolis (strain PR4 / NBRC 100887)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA ligase (ATP) activity Source: UniProtKB-EC
  3. DNA primase activity Source: InterPro

GO - Biological processi

  1. DNA ligation involved in DNA repair Source: InterPro
  2. DNA recombination Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciRERY234621:GHDE-4588-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
ATP-dependent DNA ligase LigDImported (EC:6.5.1.1Imported)
Gene namesi
Name:ligDImported
Ordered Locus Names:RER_45220Imported
OrganismiRhodococcus erythropolis (strain PR4 / NBRC 100887)Imported
Taxonomic identifieri234621 [NCBI]
Taxonomic lineageiBacteriaActinobacteriaActinobacteridaeActinomycetalesCorynebacterineaeNocardiaceaeRhodococcus
ProteomesiUP000002204 Componenti: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi234621.RER_45220.

Family & Domainsi

Phylogenomic databases

eggNOGiCOG3285.
HOGENOMiHOG000222509.
KOiK01971.
OMAiSKGIHLY.
OrthoDBiEOG661H49.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR002755. DNA_primase_S.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF01896. DNA_primase_S. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

C0ZMH2-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MATTDRGQIT LDGTTVSVTN LGKIFYPESG TTKAEVIDYY TRIAAVMLPH
60 70 80 90 100
VVGRPGTRKR WPNGVDGQSF FEKNLASSAP QWLTRASLQH SDRVVTYPIF
110 120 130 140 150
DSVASLAWLG QQAALELHVP QWRFDGSERG PATRLVFDLD PGEGVGLAEC
160 170 180 190 200
AEVARSIRDL VATLGWTAYP VTSGSKGIHL YVPLDRALDG SGASTVAKQI
210 220 230 240 250
ATGLEKLHPD LVTATMARNV RAGKIFVDWS QNNAAKTTIA PYSMRGRDQP
260 270 280 290 300
YVAAPRSWDE LDDPKLRHLL FDEVLERVES DGDLLGDLDP PVSAAVADTL
310 320 330 340 350
AHYRNKRSAD RTPEPIPAAV ANETAGNTFV IQEHHARRLH YDVRLERDGV
360 370 380 390 400
LVSWAVPKGV PTSAGENRLA VHTEDHPLEY ATFAGTIPKG EYGGGSMTIW
410 420 430 440 450
DSGTYETEKW REDEVIVRLS GERVQGRFAL IRTKGDQWLM HLMKDQNASF
460 470 480 490 500
GTEFPKNLEP MLATAGTLEG LDPQEWAFEG KWDGIRVILE YRSGTMSLRS
510 520 530 540 550
RAGNDKTRDY PALAGLAAVL DGHDVVLDGE VVAYNDAGVT DFGLLQRGGE
560 570 580 590 600
PVFLAFDLLY LDGVSLLRKS YSDRRTVLNA LAGKVGELEV PPQIEGTAEN
610 620 630 640 650
ALEVSTDAGW EGIVAKRRAS VYLPGRRGSS WIKVKNWRTQ EVVIGGWRTG
660 670 680 690 700
QGNRAQGIGA LLMGIPGEDG LTYVGRVGTG FSDRDLESLL AVLEPLRQKE
710 720 730 740 750
SPFEEELPAD DRKGAVWVRP ELVGEARFMD WTATGRLRHP SWRGLREDKK

PGDVTGRE
Length:758
Mass (Da):83,257
Last modified:May 26, 2009 - v1
Checksum:i5D32B99575C78AE1
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AP008957 Genomic DNA. Translation: BAH35230.1.
RefSeqiYP_002767969.1. NC_012490.1.

Genome annotation databases

EnsemblBacteriaiBAH35230; BAH35230; RER_45220.
KEGGirer:RER_45220.
PATRICi23195635. VBIRhoEry66701_5072.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AP008957 Genomic DNA. Translation: BAH35230.1.
RefSeqiYP_002767969.1. NC_012490.1.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi234621.RER_45220.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiBAH35230; BAH35230; RER_45220.
KEGGirer:RER_45220.
PATRICi23195635. VBIRhoEry66701_5072.

Phylogenomic databases

eggNOGiCOG3285.
HOGENOMiHOG000222509.
KOiK01971.
OMAiSKGIHLY.
OrthoDBiEOG661H49.

Enzyme and pathway databases

BioCyciRERY234621:GHDE-4588-MONOMER.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR002755. DNA_primase_S.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF01896. DNA_primase_S. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "Comparison of the complete genome sequences of Rhodococcus erythropolis PR4 and Rhodococcus opacus B4."
    Takarada H., Sekine M., Hosoyama A., Yamada R., Fujisawa T., Omata S., Shimizu A., Tsukatani N., Tanikawa S., Fujita N., Harayama S.
    Submitted (FEB-2005) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: PR4 / NBRC 100887Imported.
  2. "Sequence analysis of three plasmids harboured in Rhodococcus erythropolis strain PR4."
    Sekine M., Tanikawa S., Omata S., Saito M., Fujisawa T., Tsukatani N., Tajima T., Sekigawa T., Kosugi H., Matsuo Y., Nishiko R., Imamura K., Ito M., Narita H., Tago S., Fujita N., Harayama S.
    Environ. Microbiol. 8:334-346(2005)
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: PR4 / NBRC 100887Imported.

Entry informationi

Entry nameiC0ZMH2_RHOE4
AccessioniPrimary (citable) accession number: C0ZMH2
Entry historyi
Integrated into UniProtKB/TrEMBL: May 26, 2009
Last sequence update: May 26, 2009
Last modified: April 1, 2015
This is version 39 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.