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C0ZMH2

- C0ZMH2_RHOE4

UniProt

C0ZMH2 - C0ZMH2_RHOE4

Protein
Submitted name:

ATP-dependent DNA ligase LigD

Gene

ligD

Organism
Rhodococcus erythropolis (strain PR4 / NBRC 100887)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi
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    • History
      Entry version 35 (01 Oct 2014)
      Sequence version 1 (26 May 2009)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. ATP binding Source: InterPro
    2. DNA ligase (ATP) activity Source: UniProtKB-EC
    3. DNA primase activity Source: InterPro

    GO - Biological processi

    1. DNA ligation involved in DNA repair Source: InterPro
    2. DNA recombination Source: InterPro

    Keywords - Molecular functioni

    LigaseImported

    Enzyme and pathway databases

    BioCyciRERY234621:GHDE-4588-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    ATP-dependent DNA ligase LigDImported (EC:6.5.1.1Imported)
    Gene namesi
    Name:ligDImported
    Ordered Locus Names:RER_45220Imported
    OrganismiRhodococcus erythropolis (strain PR4 / NBRC 100887)Imported
    Taxonomic identifieri234621 [NCBI]
    Taxonomic lineageiBacteriaActinobacteriaActinobacteridaeActinomycetalesCorynebacterineaeNocardiaceaeRhodococcus
    ProteomesiUP000002204: Chromosome

    Interactioni

    Protein-protein interaction databases

    STRINGi234621.RER_45220.

    Family & Domainsi

    Phylogenomic databases

    eggNOGiCOG3285.
    HOGENOMiHOG000222509.
    KOiK01971.
    OMAiSKGIHLY.
    OrthoDBiEOG661H49.

    Family and domain databases

    Gene3Di2.40.50.140. 1 hit.
    InterProiIPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR016059. DNA_ligase_ATP-dep_CS.
    IPR014146. DNA_pol_LigD_ligase_dom.
    IPR002755. DNA_primase_S.
    IPR014144. LigD_PE_domain.
    IPR014145. LigD_pol.
    IPR012340. NA-bd_OB-fold.
    [Graphical view]
    PfamiPF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF01896. DNA_primase_S. 1 hit.
    PF13298. LigD_N. 1 hit.
    [Graphical view]
    SUPFAMiSSF50249. SSF50249. 1 hit.
    TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
    TIGR02778. ligD_pol. 1 hit.
    TIGR02779. NHEJ_ligase_lig. 1 hit.
    PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
    PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    C0ZMH2-1 [UniParc]FASTAAdd to Basket

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    MATTDRGQIT LDGTTVSVTN LGKIFYPESG TTKAEVIDYY TRIAAVMLPH    50
    VVGRPGTRKR WPNGVDGQSF FEKNLASSAP QWLTRASLQH SDRVVTYPIF 100
    DSVASLAWLG QQAALELHVP QWRFDGSERG PATRLVFDLD PGEGVGLAEC 150
    AEVARSIRDL VATLGWTAYP VTSGSKGIHL YVPLDRALDG SGASTVAKQI 200
    ATGLEKLHPD LVTATMARNV RAGKIFVDWS QNNAAKTTIA PYSMRGRDQP 250
    YVAAPRSWDE LDDPKLRHLL FDEVLERVES DGDLLGDLDP PVSAAVADTL 300
    AHYRNKRSAD RTPEPIPAAV ANETAGNTFV IQEHHARRLH YDVRLERDGV 350
    LVSWAVPKGV PTSAGENRLA VHTEDHPLEY ATFAGTIPKG EYGGGSMTIW 400
    DSGTYETEKW REDEVIVRLS GERVQGRFAL IRTKGDQWLM HLMKDQNASF 450
    GTEFPKNLEP MLATAGTLEG LDPQEWAFEG KWDGIRVILE YRSGTMSLRS 500
    RAGNDKTRDY PALAGLAAVL DGHDVVLDGE VVAYNDAGVT DFGLLQRGGE 550
    PVFLAFDLLY LDGVSLLRKS YSDRRTVLNA LAGKVGELEV PPQIEGTAEN 600
    ALEVSTDAGW EGIVAKRRAS VYLPGRRGSS WIKVKNWRTQ EVVIGGWRTG 650
    QGNRAQGIGA LLMGIPGEDG LTYVGRVGTG FSDRDLESLL AVLEPLRQKE 700
    SPFEEELPAD DRKGAVWVRP ELVGEARFMD WTATGRLRHP SWRGLREDKK 750
    PGDVTGRE 758
    Length:758
    Mass (Da):83,257
    Last modified:May 26, 2009 - v1
    Checksum:i5D32B99575C78AE1
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AP008957 Genomic DNA. Translation: BAH35230.1.
    RefSeqiWP_020908713.1. NC_012490.1.
    YP_002767969.1. NC_012490.1.

    Genome annotation databases

    EnsemblBacteriaiBAH35230; BAH35230; RER_45220.
    GeneIDi7713323.
    KEGGirer:RER_45220.
    PATRICi23195635. VBIRhoEry66701_5072.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AP008957 Genomic DNA. Translation: BAH35230.1 .
    RefSeqi WP_020908713.1. NC_012490.1.
    YP_002767969.1. NC_012490.1.

    3D structure databases

    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 234621.RER_45220.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai BAH35230 ; BAH35230 ; RER_45220 .
    GeneIDi 7713323.
    KEGGi rer:RER_45220.
    PATRICi 23195635. VBIRhoEry66701_5072.

    Phylogenomic databases

    eggNOGi COG3285.
    HOGENOMi HOG000222509.
    KOi K01971.
    OMAi SKGIHLY.
    OrthoDBi EOG661H49.

    Enzyme and pathway databases

    BioCyci RERY234621:GHDE-4588-MONOMER.

    Family and domain databases

    Gene3Di 2.40.50.140. 1 hit.
    InterProi IPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR016059. DNA_ligase_ATP-dep_CS.
    IPR014146. DNA_pol_LigD_ligase_dom.
    IPR002755. DNA_primase_S.
    IPR014144. LigD_PE_domain.
    IPR014145. LigD_pol.
    IPR012340. NA-bd_OB-fold.
    [Graphical view ]
    Pfami PF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF01896. DNA_primase_S. 1 hit.
    PF13298. LigD_N. 1 hit.
    [Graphical view ]
    SUPFAMi SSF50249. SSF50249. 1 hit.
    TIGRFAMsi TIGR02777. LigD_PE_dom. 1 hit.
    TIGR02778. ligD_pol. 1 hit.
    TIGR02779. NHEJ_ligase_lig. 1 hit.
    PROSITEi PS00697. DNA_LIGASE_A1. 1 hit.
    PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Comparison of the complete genome sequences of Rhodococcus erythropolis PR4 and Rhodococcus opacus B4."
      Takarada H., Sekine M., Hosoyama A., Yamada R., Fujisawa T., Omata S., Shimizu A., Tsukatani N., Tanikawa S., Fujita N., Harayama S.
      Submitted (MAR-2005) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: PR4 / NBRC 100887Imported.
    2. "Sequence analysis of three plasmids harboured in Rhodococcus erythropolis strain PR4."
      Sekine M., Tanikawa S., Omata S., Saito M., Fujisawa T., Tsukatani N., Tajima T., Sekigawa T., Kosugi H., Matsuo Y., Nishiko R., Imamura K., Ito M., Narita H., Tago S., Fujita N., Harayama S.
      Environ. Microbiol. 8:334-346(2006)
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: PR4 / NBRC 100887Imported.

    Entry informationi

    Entry nameiC0ZMH2_RHOE4
    AccessioniPrimary (citable) accession number: C0ZMH2
    Entry historyi
    Integrated into UniProtKB/TrEMBL: May 26, 2009
    Last sequence update: May 26, 2009
    Last modified: October 1, 2014
    This is version 35 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3