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C0QQK8 (C0QQK8_PERMH) Unreviewed, UniProtKB/TrEMBL

Last modified May 29, 2013. Version 36. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesRecommended name:
Elongation factor Tu HAMAP-Rule MF_00118
Short name=EF-Tu HAMAP-Rule MF_00118
Gene names
Name:tuf_1 EMBL ACO03452.1
Synonyms:tuf HAMAP-Rule MF_00118, tuf_2 EMBL ACO03974.1
Ordered Locus Names:PERMA_1180 EMBL ACO03452.1, PERMA_1194 EMBL ACO03974.1
OrganismPersephonella marina (strain DSM 14350 / EX-H1) [Complete proteome] [HAMAP] EMBL ACO03452.1
Taxonomic identifier123214 [NCBI]
Taxonomic lineageBacteria › Aquificae › Aquificales › Hydrogenothermaceae › Persephonella ›

Protein attributes

Sequence length396 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Function

This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis By similarity. RuleBase RU000325 HAMAP-Rule MF_00118

Subunit structure

Monomer By similarity. HAMAP-Rule MF_00118

Subcellular location

Cytoplasm By similarity HAMAP-Rule MF_00118.

Sequence similarities

Belongs to the GTP-binding elongation factor family. EF-Tu/EF-1A subfamily. RuleBase RU000325 HAMAP-Rule MF_00118

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Regions

Nucleotide binding19 – 268GTP By similarity HAMAP-Rule MF_00118
Nucleotide binding81 – 855GTP By similarity HAMAP-Rule MF_00118
Nucleotide binding136 – 1394GTP By similarity HAMAP-Rule MF_00118

Sequences

Sequence LengthMass (Da)Tools
C0QQK8 [UniParc].

Last modified May 5, 2009. Version 1.
Checksum: 6291E48B7E9B54CE

FASTA39643,887
        10         20         30         40         50         60 
MAREKFERKK EHVNVGTIGH VDHGKTTLTA AITYVLSKKG LAEFIGYGEI DKAPEERDRG 

        70         80         90        100        110        120 
ITINITHVEY ETEKRHYAHV DCPGHADYIK NMITGAAQMD GAILVVSAAD GPMPQTREHV 

       130        140        150        160        170        180 
LLARQVNVPY IVVFLNKCDM VDDEELLELV ELEVRELLNK YEFPGDDVPV IRGSALGALN 

       190        200        210        220        230        240 
DEEKWVKSIE ELLDAMDNYI PTPERATDKP FLMAIEDVFT ISGRGTVVTG RVERGTLKVG 

       250        260        270        280        290        300 
DEVEIVGLSD EIRKTVVTGI EMFRKTLDEA VAGDNVGVLL RGIGKDEVER GQVLAAPGSI 

       310        320        330        340        350        360 
TPHKKFKAQV YILSKEEGGR HTPFFLGYRP QFYIRTADIT GTVVELPEGQ EMVMPGDNVE 

       370        380        390 
LTVELMEPVA IEEQMRFAIR EGGRTVGAGV VTQIIE

« Hide

References

« Hide 'large scale' references
[1]Zhirakovskaya E., Gorbunova M., Tikunov A., Babkin I., Tikunova N.
Submitted (NOV-2008) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
Strain: EX-H1 EMBL ACO03452.1.
[2]"Complete and draft genome sequences of six members of the Aquificales."
Reysenbach A.L., Hamamura N., Podar M., Griffiths E., Ferreira S., Hochstein R., Heidelberg J., Johnson J., Mead D., Pohorille A., Sarmiento M., Schweighofer K., Seshadri R., Voytek M.A.
J. Bacteriol. 191:1992-1993(2009) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: DSM 14350 / EX-H1 and EX-H1 EMBL ACO03452.1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		CP001230 Genomic DNA. Translation: ACO03452.1.
CP001230 Genomic DNA. Translation: ACO03974.1.
RefSeqYP_002730954.1. NC_012440.1.
YP_002730967.1. NC_012440.1.

3D structure databases

ModBaseSearch...

Protein-protein interaction databases

STRING123214.PERMA_1194.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaACO03452; ACO03452; PERMA_1180.
ACO03974; ACO03974; PERMA_1194.
GeneID7675567.
7675637.
KEGGpmx:PERMA_1180.
pmx:PERMA_1194.
PATRIC22915819. VBIPerMar119911_1204.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG0050.
HOGENOMHOG000229290.
KOK02358.
OMACEFVGYN.
ProtClustDBPRK12735.

Enzyme and pathway databases

BioCycPMAR123214:GIZP-1179-MONOMER.
PMAR123214:GIZP-1193-MONOMER.

Family and domain databases

HAMAPMF_00118_B. EF_Tu_B.
InterProIPR000795. EF_GTP-bd_dom.
IPR027417. P-loop_NTPase.
IPR005225. Small_GTP-bd_dom.
IPR009001. Transl_elong_EF1A/Init_IF2_C.
IPR004161. Transl_elong_EFTu/EF1A_2.
IPR004541. Transl_elong_EFTu/EF1A_bac/org.
IPR004160. Transl_elong_EFTu/EF1A_C.
IPR009000. Transl_elong_init/rib_B-barrel.
[Graphical view]
PfamPF00009. GTP_EFTU. 1 hit.
PF03144. GTP_EFTU_D2. 1 hit.
PF03143. GTP_EFTU_D3. 1 hit.
[Graphical view]
PRINTSPR00315. ELONGATNFCT.
SUPFAMSSF50465. Elong_init_C. 1 hit.
SSF52540. SSF52540. 1 hit.
SSF50447. Translat_factor. 1 hit.
TIGRFAMsTIGR00485. EF-Tu. 1 hit.
TIGR00231. small_GTP. 1 hit.
PROSITEPS00301. EFACTOR_GTP. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameC0QQK8_PERMH
AccessionPrimary (citable) accession number: C0QQK8
Entry history
Integrated into UniProtKB/TrEMBL: May 5, 2009
Last sequence update: May 5, 2009
Last modified: May 29, 2013
This is version 36 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info