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C0QQK8

- C0QQK8_PERMH

UniProt

C0QQK8 - C0QQK8_PERMH

Protein

Elongation factor Tu

Gene

tuf_1

Organism
Persephonella marina (strain DSM 14350 / EX-H1)
Status
Unreviewed - Annotation score: 2 out of 5- Protein inferred from homologyi
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    • History
      Entry version 46 (01 Oct 2014)
      Sequence version 1 (05 May 2009)
      Previous versions | rss
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    Functioni

    This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis.UniRule annotation

    Regions

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Nucleotide bindingi19 – 268GTPUniRule annotation
    Nucleotide bindingi81 – 855GTPUniRule annotation
    Nucleotide bindingi136 – 1394GTPUniRule annotation

    GO - Molecular functioni

    1. GTPase activity Source: InterPro
    2. GTP binding Source: UniProtKB-HAMAP
    3. translation elongation factor activity Source: UniProtKB-HAMAP

    Keywords - Molecular functioni

    Elongation factorUniRule annotationImported

    Keywords - Biological processi

    Protein biosynthesis

    Keywords - Ligandi

    GTP-bindingUniRule annotation, Nucleotide-binding

    Enzyme and pathway databases

    BioCyciPMAR123214:GIZP-1179-MONOMER.
    PMAR123214:GIZP-1193-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    Elongation factor TuUniRule annotation
    Short name:
    EF-TuUniRule annotation
    Gene namesi
    Name:tuf_1Imported
    Synonyms:tufUniRule annotation, tuf_2Imported
    Ordered Locus Names:PERMA_1180Imported, PERMA_1194Imported
    OrganismiPersephonella marina (strain DSM 14350 / EX-H1)Imported
    Taxonomic identifieri123214 [NCBI]
    Taxonomic lineageiBacteriaAquificaeAquificalesHydrogenothermaceaePersephonella
    ProteomesiUP000001366: Chromosome

    Subcellular locationi

    Cytoplasm UniRule annotation

    GO - Cellular componenti

    1. cytoplasm Source: UniProtKB-SubCell

    Keywords - Cellular componenti

    CytoplasmUniRule annotation

    Interactioni

    Subunit structurei

    Monomer.UniRule annotation

    Protein-protein interaction databases

    STRINGi123214.PERMA_1194.

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the GTP-binding elongation factor family. EF-Tu/EF-1A subfamily.UniRule annotation
    Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. EF-Tu/EF-1A subfamily.UniRule annotation

    Phylogenomic databases

    eggNOGiCOG0050.
    HOGENOMiHOG000229290.
    KOiK02358.
    OMAiGTEMCMP.
    OrthoDBiEOG6R5C6X.

    Family and domain databases

    Gene3Di3.40.50.300. 1 hit.
    HAMAPiMF_00118_B. EF_Tu_B.
    InterProiIPR000795. EF_GTP-bd_dom.
    IPR027417. P-loop_NTPase.
    IPR005225. Small_GTP-bd_dom.
    IPR009000. Transl_B-barrel.
    IPR009001. Transl_elong_EF1A/Init_IF2_C.
    IPR004161. Transl_elong_EFTu/EF1A_2.
    IPR004541. Transl_elong_EFTu/EF1A_bac/org.
    IPR004160. Transl_elong_EFTu/EF1A_C.
    [Graphical view]
    PfamiPF00009. GTP_EFTU. 1 hit.
    PF03144. GTP_EFTU_D2. 1 hit.
    PF03143. GTP_EFTU_D3. 1 hit.
    [Graphical view]
    PRINTSiPR00315. ELONGATNFCT.
    SUPFAMiSSF50447. SSF50447. 1 hit.
    SSF50465. SSF50465. 1 hit.
    SSF52540. SSF52540. 1 hit.
    TIGRFAMsiTIGR00485. EF-Tu. 1 hit.
    TIGR00231. small_GTP. 1 hit.
    PROSITEiPS00301. EFACTOR_GTP. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    C0QQK8-1 [UniParc]FASTAAdd to Basket

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    MAREKFERKK EHVNVGTIGH VDHGKTTLTA AITYVLSKKG LAEFIGYGEI    50
    DKAPEERDRG ITINITHVEY ETEKRHYAHV DCPGHADYIK NMITGAAQMD 100
    GAILVVSAAD GPMPQTREHV LLARQVNVPY IVVFLNKCDM VDDEELLELV 150
    ELEVRELLNK YEFPGDDVPV IRGSALGALN DEEKWVKSIE ELLDAMDNYI 200
    PTPERATDKP FLMAIEDVFT ISGRGTVVTG RVERGTLKVG DEVEIVGLSD 250
    EIRKTVVTGI EMFRKTLDEA VAGDNVGVLL RGIGKDEVER GQVLAAPGSI 300
    TPHKKFKAQV YILSKEEGGR HTPFFLGYRP QFYIRTADIT GTVVELPEGQ 350
    EMVMPGDNVE LTVELMEPVA IEEQMRFAIR EGGRTVGAGV VTQIIE 396
    Length:396
    Mass (Da):43,887
    Last modified:May 5, 2009 - v1
    Checksum:i6291E48B7E9B54CE
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP001230 Genomic DNA. Translation: ACO03452.1.
    CP001230 Genomic DNA. Translation: ACO03974.1.
    RefSeqiYP_002730954.1. NC_012440.1.
    YP_002730967.1. NC_012440.1.

    Genome annotation databases

    EnsemblBacteriaiACO03452; ACO03452; PERMA_1180.
    ACO03974; ACO03974; PERMA_1194.
    GeneIDi7675567.
    7675637.
    KEGGipmx:PERMA_1180.
    pmx:PERMA_1194.
    PATRICi22915819. VBIPerMar119911_1204.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP001230 Genomic DNA. Translation: ACO03452.1 .
    CP001230 Genomic DNA. Translation: ACO03974.1 .
    RefSeqi YP_002730954.1. NC_012440.1.
    YP_002730967.1. NC_012440.1.

    3D structure databases

    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 123214.PERMA_1194.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai ACO03452 ; ACO03452 ; PERMA_1180 .
    ACO03974 ; ACO03974 ; PERMA_1194 .
    GeneIDi 7675567.
    7675637.
    KEGGi pmx:PERMA_1180.
    pmx:PERMA_1194.
    PATRICi 22915819. VBIPerMar119911_1204.

    Phylogenomic databases

    eggNOGi COG0050.
    HOGENOMi HOG000229290.
    KOi K02358.
    OMAi GTEMCMP.
    OrthoDBi EOG6R5C6X.

    Enzyme and pathway databases

    BioCyci PMAR123214:GIZP-1179-MONOMER.
    PMAR123214:GIZP-1193-MONOMER.

    Family and domain databases

    Gene3Di 3.40.50.300. 1 hit.
    HAMAPi MF_00118_B. EF_Tu_B.
    InterProi IPR000795. EF_GTP-bd_dom.
    IPR027417. P-loop_NTPase.
    IPR005225. Small_GTP-bd_dom.
    IPR009000. Transl_B-barrel.
    IPR009001. Transl_elong_EF1A/Init_IF2_C.
    IPR004161. Transl_elong_EFTu/EF1A_2.
    IPR004541. Transl_elong_EFTu/EF1A_bac/org.
    IPR004160. Transl_elong_EFTu/EF1A_C.
    [Graphical view ]
    Pfami PF00009. GTP_EFTU. 1 hit.
    PF03144. GTP_EFTU_D2. 1 hit.
    PF03143. GTP_EFTU_D3. 1 hit.
    [Graphical view ]
    PRINTSi PR00315. ELONGATNFCT.
    SUPFAMi SSF50447. SSF50447. 1 hit.
    SSF50465. SSF50465. 1 hit.
    SSF52540. SSF52540. 1 hit.
    TIGRFAMsi TIGR00485. EF-Tu. 1 hit.
    TIGR00231. small_GTP. 1 hit.
    PROSITEi PS00301. EFACTOR_GTP. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. Heidelberg J.F., Reysenbach A.-L., Nelson W.C.
      Submitted (NOV-2008) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE.
      Strain: EX-H1.
    2. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: DSM 14350 / EX-H1Imported and EX-H1Imported.

    Entry informationi

    Entry nameiC0QQK8_PERMH
    AccessioniPrimary (citable) accession number: C0QQK8
    Entry historyi
    Integrated into UniProtKB/TrEMBL: May 5, 2009
    Last sequence update: May 5, 2009
    Last modified: October 1, 2014
    This is version 46 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3