C0QBD2 (C0QBD2_DESAH) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
GabT EMBL ACN16934.1
EC=2.6.1.19 EMBL ACN16934.1
EC=2.6.1.22 EMBL ACN16934.1

Gene names

Name:	gabT EMBL ACN16934.1
Ordered Locus Names:	HRM2_38760

Organism

Desulfobacterium autotrophicum (strain ATCC 43914 / DSM 3382 / HRM2) [Complete proteome] [HAMAP] EMBL ACN16934.1

Taxonomic identifier

177437 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Proteobacteria › delta/epsilon subdivisions › Deltaproteobacteria › Desulfobacterales › Desulfobacteraceae › Desulfobacterium › Desulfobacterium autotrophicum

Protein attributes

Sequence length	435 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Sequence similarities

Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. RuleBase RU003560

Ontologies

Keywords
Ligand	Pyridoxal phosphate RuleBase RU003560
Molecular function	Aminotransferase EMBL ACN16934.1 Transferase
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	gamma-aminobutyric acid metabolic process Inferred from electronic annotation. Source: InterPro
Molecular_function	(S)-3-amino-2-methylpropionate transaminase activity Inferred from electronic annotation. Source: EC 4-aminobutyrate transaminase activity Inferred from electronic annotation. Source: EC pyridoxal phosphate binding Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	C0QBD2 [UniParc]. Last modified May 5, 2009. Version 1. Checksum: 0DF273EA4F6D3A9C	FASTA	435	47,449
	10 20 30 40 50 60 MTENRSDYYQ KLRNKNVPQG PANITPAYIA KASGATMTDL EGKEYIDFAG GIGVNNVGHA 70 80 90 100 110 120 HPKVVAAIKD QADKFIHTCF HVGMYESYVD LAAKLNELVP GDFPKMTMFA NAGAEAVENA 130 140 150 160 170 180 VKIARYATKR PAVIAMENGF HGRTLLTMSL TSKVKPYKFG FGPFAPEVYR IPYAYCYRCP 190 200 210 220 230 240 FGLKYPNCGV ACADYLEDFF ISNVAAESTA AIIAEPIQGE GGFVTPPPEY FPKLAAICKK 250 260 270 280 290 300 YGIALIIDEV QSGAGRTGKF LAIEHWNVEP DIVTMAKSLG GGMPLSAITG RKEFMEAPHI 310 320 330 340 350 360 GGLGGTYSGN PISCAAALAV LEILFEDKLL ERSRELGEIL QKRFSDLQSK FEIIGEVRGK 370 380 390 400 410 420 GPMLGMELVK DRETKEPATE LTKKLTQICF DKGLILLSCG NFGNVIRTLM PFVITDAQLD 430 KGLSILEESL HELTK

References

[1]

"Genome sequence of Desulfobacterium autotrophicum HRM2, a marine sulfate reducer oxidizing organic carbon completely to carbon dioxide." Strittmatter A.W., Liesegang H., Rabus R., Decker I., Amann J., Andres S., Henne A., Fricke W.F., Martinez-Arias R., Bartels D., Goesmann A., Krause L., Puehler A., Klenk H.P., Richter M., Schuler M., Gloeckner F.O., Meyerdierks A., Gottschalk G., Amann R. Environ. Microbiol. 11:1038-1055(2009) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: ATCC 43914 / DSM 3382 / HRM2.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP001087 Genomic DNA. Translation: ACN16934.1.
RefSeq	YP_002605098.1. NC_012108.1.
3D structure databases
ProteinModelPortal	C0QBD2.
ModBase	Search...
Protein-protein interaction databases
STRING	177437.HRM2_38760.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	ACN16934; ACN16934; HRM2_38760.
GeneID	7498956.
KEGG	dat:HRM2_38760.
PATRIC	21687527. VBIDesAut25181_3991.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	COG0160.
HOGENOM	HOG000020206.
KO	K07250.
OMA	DTREPDK.
ProtClustDB	CLSK2473843.
Enzyme and pathway databases
BioCyc	DAUT177437:GHLR-3874-MONOMER.
Family and domain databases
Gene3D	3.40.640.10. 1 hit. 3.90.1150.10. 1 hit.
InterPro	IPR004632. 4NH2But_aminotransferase_bac. IPR005814. Aminotrans_3. IPR015424. PyrdxlP-dep_Trfase. IPR015421. PyrdxlP-dep_Trfase_major_sub1. IPR015422. PyrdxlP-dep_Trfase_major_sub2. [Graphical view]
PANTHER	PTHR11986. PTHR11986. 1 hit.
Pfam	PF00202. Aminotran_3. 1 hit. [Graphical view]
SUPFAM	SSF53383. PyrdxlP-dep_Trfase_major. 1 hit.
TIGRFAMs	TIGR00700. GABAtrnsam. 1 hit.
PROSITE	PS00600. AA_TRANSFER_CLASS_3. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

C0QBD2_DESAH

Accession

Primary (citable) accession number: C0QBD2

Entry history

Integrated into UniProtKB/TrEMBL:	May 5, 2009
Last sequence update:	May 5, 2009
Last modified:	May 29, 2013
This is version 28 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)