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C0Q8U5

- C0Q8U5_DESAH

UniProt

C0Q8U5 - C0Q8U5_DESAH

Protein
Submitted name:

DdlB2

Gene

ddlB2

Organism
Desulfobacterium autotrophicum (strain ATCC 43914 / DSM 3382 / HRM2)
Status
Unreviewed - Annotation score: 2 out of 5- Protein predictedi
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    • History
      Entry version 36 (01 Oct 2014)
      Sequence version 1 (05 May 2009)
      Previous versions | rss
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    Functioni

    Cell wall formation.SAAS annotation

    Catalytic activityi

    ATP + 2 D-alanine = ADP + phosphate + D-alanyl-D-alanine.SAAS annotation

    Cofactori

    Binds 2 magnesium or manganese ions per subunit.SAAS annotation

    Pathwayi

    GO - Molecular functioni

    1. ATP binding Source: UniProtKB-KW
    2. D-alanine-D-alanine ligase activity Source: UniProtKB-EC
    3. metal ion binding Source: UniProtKB-KW

    GO - Biological processi

    1. peptidoglycan biosynthetic process Source: UniProtKB-UniPathway
    2. regulation of cell shape Source: UniProtKB-KW

    Keywords - Molecular functioni

    LigaseSAAS annotationImported

    Keywords - Biological processi

    Cell shape, Cell wall biogenesis/degradationSAAS annotation, Peptidoglycan synthesisSAAS annotation

    Keywords - Ligandi

    ATP-bindingSAAS annotation, MagnesiumSAAS annotation, ManganeseSAAS annotation, Metal-bindingSAAS annotation, Nucleotide-binding

    Enzyme and pathway databases

    BioCyciDAUT177437:GHLR-1324-MONOMER.
    UniPathwayiUPA00219.

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    DdlB2Imported (EC:6.3.2.4Imported)
    Gene namesi
    Name:ddlB2Imported
    Ordered Locus Names:HRM2_13240Imported
    OrganismiDesulfobacterium autotrophicum (strain ATCC 43914 / DSM 3382 / HRM2)Imported
    Taxonomic identifieri177437 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaDeltaproteobacteriaDesulfobacteralesDesulfobacteraceaeDesulfobacterium
    ProteomesiUP000000442: Chromosome

    Subcellular locationi

    Cytoplasm SAAS annotation

    GO - Cellular componenti

    1. cytoplasm Source: UniProtKB-SubCell

    Keywords - Cellular componenti

    CytoplasmSAAS annotation

    Interactioni

    Protein-protein interaction databases

    STRINGi177437.HRM2_13240.

    Structurei

    3D structure databases

    ProteinModelPortaliC0Q8U5.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Sequence similaritiesi

    Contains ATP-grasp domain.SAAS annotation

    Phylogenomic databases

    eggNOGiCOG1181.
    HOGENOMiHOG000011592.
    KOiK01921.
    OMAiEMAGVPC.
    OrthoDBiEOG66MQKK.

    Family and domain databases

    Gene3Di3.30.1490.20. 1 hit.
    3.30.470.20. 1 hit.
    InterProiIPR011761. ATP-grasp.
    IPR013815. ATP_grasp_subdomain_1.
    IPR013816. ATP_grasp_subdomain_2.
    IPR005905. D_ala_D_ala.
    IPR011095. Dala_Dala_lig_C.
    IPR016185. PreATP-grasp_dom.
    [Graphical view]
    PANTHERiPTHR23132. PTHR23132. 1 hit.
    PfamiPF07478. Dala_Dala_lig_C. 1 hit.
    [Graphical view]
    SUPFAMiSSF52440. SSF52440. 1 hit.
    PROSITEiPS50975. ATP_GRASP. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    C0Q8U5-1 [UniParc]FASTAAdd to Basket

    « Hide

    MIIGITYDLR QDYLDMGYTE LETAEFDSVE TIEAIETTLQ GLGHETRRIG    50
    NAIRLTERLV QGERWDLVFN IAEGLHGIGR EAQIPAILDL YNIPYTFSDP 100
    MVMAVTLHKG MTKHIIRDAG LATADFKVAN SARDAWNLPF DPPFFVKPVA 150
    EGTGMGITAK SLVKNALDLP GVCQELVEQF HQPVLIEEFL TGREFTVGIV 200
    GTGTRAQVMG TMEIIVISSK KDEVYSFENK EGWKSKVQYL PLSPGTDPLI 250
    QAVEDLALSA WKVLGCRDGG RIDIRCDAAG RPSFIEVNPL AGLRPEYSDL 300
    PIVCQFFGTS YVQLIELILE SAMERVPVLE TA 332
    Length:332
    Mass (Da):36,753
    Last modified:May 5, 2009 - v1
    Checksum:iEDC71F94E221DA6A
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP001087 Genomic DNA. Translation: ACN14435.1.
    RefSeqiYP_002602599.1. NC_012108.1.

    Genome annotation databases

    EnsemblBacteriaiACN14435; ACN14435; HRM2_13240.
    GeneIDi7501247.
    KEGGidat:HRM2_13240.
    PATRICi21682289. VBIDesAut25181_1424.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP001087 Genomic DNA. Translation: ACN14435.1 .
    RefSeqi YP_002602599.1. NC_012108.1.

    3D structure databases

    ProteinModelPortali C0Q8U5.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 177437.HRM2_13240.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai ACN14435 ; ACN14435 ; HRM2_13240 .
    GeneIDi 7501247.
    KEGGi dat:HRM2_13240.
    PATRICi 21682289. VBIDesAut25181_1424.

    Phylogenomic databases

    eggNOGi COG1181.
    HOGENOMi HOG000011592.
    KOi K01921.
    OMAi EMAGVPC.
    OrthoDBi EOG66MQKK.

    Enzyme and pathway databases

    UniPathwayi UPA00219 .
    BioCyci DAUT177437:GHLR-1324-MONOMER.

    Family and domain databases

    Gene3Di 3.30.1490.20. 1 hit.
    3.30.470.20. 1 hit.
    InterProi IPR011761. ATP-grasp.
    IPR013815. ATP_grasp_subdomain_1.
    IPR013816. ATP_grasp_subdomain_2.
    IPR005905. D_ala_D_ala.
    IPR011095. Dala_Dala_lig_C.
    IPR016185. PreATP-grasp_dom.
    [Graphical view ]
    PANTHERi PTHR23132. PTHR23132. 1 hit.
    Pfami PF07478. Dala_Dala_lig_C. 1 hit.
    [Graphical view ]
    SUPFAMi SSF52440. SSF52440. 1 hit.
    PROSITEi PS50975. ATP_GRASP. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: ATCC 43914 / DSM 3382 / HRM2Imported.

    Entry informationi

    Entry nameiC0Q8U5_DESAH
    AccessioniPrimary (citable) accession number: C0Q8U5
    Entry historyi
    Integrated into UniProtKB/TrEMBL: May 5, 2009
    Last sequence update: May 5, 2009
    Last modified: October 1, 2014
    This is version 36 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3