C0Q496 (C0Q496_SALPC) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Recommended name:
Pseudouridine synthase RuleBase RU003887
EC=5.4.99.- RuleBase RU003887

Gene names

Name:	yjbC EMBL ACN48315.1
Ordered Locus Names:	SPC_4252 EMBL ACN48315.1

Organism

Salmonella paratyphi C (strain RKS4594) [Complete proteome] [HAMAP] EMBL ACN48315.1

Taxonomic identifier

476213 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Proteobacteria › Gammaproteobacteria › Enterobacteriales › Enterobacteriaceae › Salmonella › Salmonella choleraesuis › Salmonella enterica I › Salmonella enterica subsp. enterica serovar Paratyphi C

Protein attributes

Sequence length	289 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Sequence similarities

Belongs to the pseudouridine synthase rsuA family. RuleBase RU003887 Contains 1 S4 RNA-binding domain. SAAS SAAS006145

Ontologies

Keywords
Ligand	RNA-binding SAAS SAAS006145
Molecular function	Isomerase SAAS SAAS006145 RuleBase RU003887
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	pseudouridine synthesis Inferred from electronic annotation. Source: InterPro
Molecular_function	RNA binding Inferred from electronic annotation. Source: UniProtKB-KW pseudouridine synthase activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	C0Q496 [UniParc]. Last modified May 5, 2009. Version 1. Checksum: BE6E206997EB252B	FASTA	289	32,338
	10 20 30 40 50 60 MLTDTSIRLN KYISESGICS RREADRFIEQ GNVFINGKRA AIGDQVVAGD VVKVNGRLIE 70 80 90 100 110 120 SREADDLVLI ALNKPVGIVS TTEDGERDNI VDFVNHSKRI FPIGRLDKDS QGLIFLTNHG 130 140 150 160 170 180 DLVNKILRAG NDHEKEYLVT VDKPITDEFI RGMGAGVPIL GTVTKKCKVK KEAPFVFRIT 190 200 210 220 230 240 LVQGLNRQIR RMCEYFGYEV TKLERTRIMN VSLSGIPLGE WRDLTDDELI DLFKLIERSS 250 260 270 280 SEAKPKAKAK PKTTGIKRPV VAIEKSNEKA RPTSSGKRFT SPGRKKKGR

References

[1]

"Salmonella paratyphi C: genetic divergence from Salmonella choleraesuis and pathogenic convergence with Salmonella typhi." Liu W.Q., Feng Y., Wang Y., Zou Q.H., Chen F., Guo J.T., Peng Y.H., Jin Y., Li Y.G., Hu S.N., Johnston R.N., Liu G.R., Liu S.L. PLoS ONE 4:E4510-E4510(2009) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: RKS4594 EMBL ACN48315.1.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP000857 Genomic DNA. Translation: ACN48315.1.
RefSeq	YP_002639756.1. NC_012125.1.
3D structure databases
ModBase	Search...
Protein-protein interaction databases
STRING	476213.SPC_4252.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	ACN48315; ACN48315; SPC_4252.
GeneID	7556825.
KEGG	sei:SPC_4252.
PATRIC	32367522. VBISalEnt12305_4314.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	COG1187.
HOGENOM	HOG000044954.
KO	K06182.
OMA	MNVSLKG.
ProtClustDB	PRK10475.
Enzyme and pathway databases
BioCyc	SENT476213:GH8J-4341-MONOMER.
Family and domain databases
Gene3D	3.10.290.10. 1 hit.
InterPro	IPR020103. PsdUridine_synth_cat_dom. IPR000748. PsdUridine_synth_RsuA/RluB/E/F. IPR018496. PsdUridine_synth_RsuA/RluB_CS. IPR006145. PsdUridine_synth_RsuA/RluD. IPR002942. S4_RNA-bd. [Graphical view]
Pfam	PF00849. PseudoU_synth_2. 1 hit. PF01479. S4. 1 hit. [Graphical view]
SMART	SM00363. S4. 1 hit. [Graphical view]
SUPFAM	SSF55120. PsdUridine_synth_cat_dom. 1 hit.
TIGRFAMs	TIGR00093. TIGR00093. 1 hit.
PROSITE	PS01149. PSI_RSU. 1 hit. PS50889. S4. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

C0Q496_SALPC

Accession

Primary (citable) accession number: C0Q496

Entry history

Integrated into UniProtKB/TrEMBL:	May 5, 2009
Last sequence update:	May 5, 2009
Last modified:	May 1, 2013
This is version 30 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)