Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Protein
Submitted name:

Nitrite reductase small subunit

Gene

nirD

Organism
Salmonella paratyphi C (strain RKS4594)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Enzyme and pathway databases

BioCyciSENT476213:GH8J-3606-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
Nitrite reductase small subunitImported
Gene namesi
Name:nirDImported
Ordered Locus Names:SPC_3545Imported
OrganismiSalmonella paratyphi C (strain RKS4594)Imported
Taxonomic identifieri476213 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeSalmonella
ProteomesiUP000001599 Componenti: Chromosome

PTM / Processingi

Proteomic databases

PRIDEiC0Q0F1.

Structurei

3D structure databases

ProteinModelPortaliC0Q0F1.
SMRiC0Q0F1. Positions 1-108.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

eggNOGiCOG2146.
HOGENOMiHOG000128543.
OMAiGVCALVD.
OrthoDBiEOG6PP9RC.

Family and domain databases

Gene3Di2.102.10.10. 1 hit.
InterProiIPR012748. Nitri_red_NirD.
IPR017881. Nitrite_Rdtase_lsu_NirD_bac.
IPR017941. Rieske_2Fe-2S.
[Graphical view]
SUPFAMiSSF50022. SSF50022. 1 hit.
TIGRFAMsiTIGR02378. nirD_assim_sml. 1 hit.
PROSITEiPS51300. NIRD. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

C0Q0F1-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSQWQNICKI DDILPGTGVC ALSGGEQVAI FRPYHSDQVF AISNIDPFFE
60 70 80 90 100
ASVLSRGLIA EHQGELWVAS PLKKQRFRLS DGLCMEDEQF SVKHYDARVK

DGVVQLRG
Length:108
Mass (Da):12,097
Last modified:May 5, 2009 - v1
Checksum:i375C6D13AFF98161
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000857 Genomic DNA. Translation: ACN47628.1.
RefSeqiWP_000084814.1. NC_012125.1.
YP_002639069.1. NC_012125.1.

Genome annotation databases

EnsemblBacteriaiACN47628; ACN47628; SPC_3545.
PATRICi32366031. VBISalEnt12305_3599.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000857 Genomic DNA. Translation: ACN47628.1.
RefSeqiWP_000084814.1. NC_012125.1.
YP_002639069.1. NC_012125.1.

3D structure databases

ProteinModelPortaliC0Q0F1.
SMRiC0Q0F1. Positions 1-108.
ModBaseiSearch...
MobiDBiSearch...

Proteomic databases

PRIDEiC0Q0F1.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiACN47628; ACN47628; SPC_3545.
PATRICi32366031. VBISalEnt12305_3599.

Phylogenomic databases

eggNOGiCOG2146.
HOGENOMiHOG000128543.
OMAiGVCALVD.
OrthoDBiEOG6PP9RC.

Enzyme and pathway databases

BioCyciSENT476213:GH8J-3606-MONOMER.

Family and domain databases

Gene3Di2.102.10.10. 1 hit.
InterProiIPR012748. Nitri_red_NirD.
IPR017881. Nitrite_Rdtase_lsu_NirD_bac.
IPR017941. Rieske_2Fe-2S.
[Graphical view]
SUPFAMiSSF50022. SSF50022. 1 hit.
TIGRFAMsiTIGR02378. nirD_assim_sml. 1 hit.
PROSITEiPS51300. NIRD. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "Salmonella paratyphi C: genetic divergence from Salmonella choleraesuis and pathogenic convergence with Salmonella typhi."
    Liu W.-Q., Feng Y., Wang Y., Zou Q.-H., Chen F., Guo J.-T., Peng Y.-H., Jin Y., Li Y.-G., Hu S.-N., Johnston R.N., Liu G.-R., Liu S.-L.
    PLoS ONE 4:E4510-E4510(2009) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: RKS4594Imported.

Entry informationi

Entry nameiC0Q0F1_SALPC
AccessioniPrimary (citable) accession number: C0Q0F1
Entry historyi
Integrated into UniProtKB/TrEMBL: May 5, 2009
Last sequence update: May 5, 2009
Last modified: June 24, 2015
This is version 38 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.