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C0PGE4 (C0PGE4_MAIZE) Unreviewed, UniProtKB/TrEMBL

Last modified March 19, 2014. Version 36. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein names
OrganismZea mays (Maize) EMBL ACN34260.1
Taxonomic identifier4577 [NCBI]
Taxonomic lineageEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaLiliopsidaPoalesPoaceaePACMAD cladePanicoideaeAndropogoneaeZea

Protein attributes

Sequence length441 AA.
Sequence statusComplete.
Protein existenceEvidence at transcript level

General annotation (Comments)

Sequence similarities

Belongs to the glycosyl hydrolase 13 family. RuleBase RU003615

Sequences

Sequence LengthMass (Da)Tools
C0PGE4 [UniParc].

Last modified May 5, 2009. Version 1.
Checksum: 3AC31F7E00097F23

FASTA44148,416
        10         20         30         40         50         60 
MMKHSSSLCL LFLLALCTTL LACGLVQAQV LFQGFNWESC KQQGGWYNRL KAQVDDIAKA 

        70         80         90        100        110        120 
GVTHVWLPPP SHSVSPQGYM PGRLYDLDAS KYGTAAELKS LIAAFHGRGV QCVADIVINH 

       130        140        150        160        170        180 
RCAEKKDARG VYCIFEGGTP DDRLDWGPGM ICSDDTQYSD GTGHRDTGEG FAAAPDIDHL 

       190        200        210        220        230        240 
NPRVQRELSA WLNWLRSDAV GFDGWRLDFA KGYSPAVARM YVESTGPPSF VVAEIWNSLS 

       250        260        270        280        290        300 
YSGDGKPAPN QDQCRQELLD WTRAVGGPAM AFDFPTKGLL QAGVQGELWR LRDSSGNAAG 

       310        320        330        340        350        360 
LIGWAPEKAV TFVDNHDTGS TQKLWPFPSD KVMQGYAYIL THPGVPCIFY DHMFDWNLKQ 

       370        380        390        400        410        420 
EISTLSAIRA RNGIRAGSKL RILVADADAY VAVVDEKVMV KIGTRYGVSS VVPSDFHPAA 

       430        440 
HGKDYCVWEK ASLRVPAGRH L 

« Hide

References

[1]"Sequencing, mapping, and analysis of 27,455 maize full-length cDNAs."
Soderlund C., Descour A., Kudrna D., Bomhoff M., Boyd L., Currie J., Angelova A., Collura K., Wissotski M., Ashley E., Morrow D., Fernandes J., Walbot V., Yu Y.
PLoS Genet. 5:E1000740-E1000740(2009) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE.
Strain: B73 EMBL ACN34260.1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
BT067363 mRNA. Translation: ACN34260.1.
RefSeqNP_001169611.1. NM_001176140.1.
UniGeneZm.38505.

3D structure databases

ProteinModelPortalC0PGE4.
ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

GeneID100383492.
KEGGzma:100383492.

Organism-specific databases

GrameneC0PGE4.

Phylogenomic databases

HOGENOMHOG000239525.
KOK01176.
OMANHRCAEK.

Family and domain databases

Gene3D2.60.40.1180. 1 hit.
3.20.20.80. 1 hit.
InterProIPR012850. A-amylase_bs_C.
IPR013775. A-amylase_pln.
IPR006046. Alpha_amylase.
IPR015902. Glyco_hydro_13.
IPR013780. Glyco_hydro_13_b.
IPR006047. Glyco_hydro_13_cat_dom.
IPR006589. Glyco_hydro_13_sub_cat_dom.
IPR013781. Glyco_hydro_catalytic_dom.
IPR017853. Glycoside_hydrolase_SF.
[Graphical view]
PANTHERPTHR10357. PTHR10357. 1 hit.
PfamPF07821. Alpha-amyl_C2. 1 hit.
PF00128. Alpha-amylase. 1 hit.
[Graphical view]
PIRSFPIRSF001028. Alph-amls_plant. 1 hit.
PRINTSPR00110. ALPHAAMYLASE.
SMARTSM00642. Aamy. 1 hit.
SM00810. Alpha-amyl_C2. 1 hit.
[Graphical view]
SUPFAMSSF51445. SSF51445. 1 hit.
ProtoNetSearch...

Entry information

Entry nameC0PGE4_MAIZE
AccessionPrimary (citable) accession number: C0PGE4
Entry history
Integrated into UniProtKB/TrEMBL: May 5, 2009
Last sequence update: May 5, 2009
Last modified: March 19, 2014
This is version 36 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)