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C0LGF5 (Y1341_ARATH) Reviewed, UniProtKB/Swiss-Prot

Last modified May 1, 2013. Version 37. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (2) | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order

Names and origin

Protein namesRecommended name:
Probable LRR receptor-like serine/threonine-protein kinase At1g34110
EC=2.7.11.1
Gene names
Ordered Locus Names:At1g34110
ORF Names:F12G12.7
OrganismArabidopsis thaliana (Mouse-ear cress) [Reference proteome]
Taxonomic identifier3702 [NCBI]
Taxonomic lineageEukaryota › Viridiplantae › Streptophyta › Embryophyta › Tracheophyta › Spermatophyta › Magnoliophyta › eudicotyledons › core eudicotyledons › rosids › malvids › Brassicales › Brassicaceae › Camelineae › Arabidopsis

Protein attributes

Sequence length1072 AA.
Sequence statusComplete.
Sequence processingThe displayed sequence is further processed into a mature form.
Protein existenceEvidence at transcript level

General annotation (Comments)

Catalytic activity

ATP + a protein = ADP + a phosphoprotein.

Subcellular location

Membrane; Single-pass type I membrane protein Potential.

Sequence similarities

Belongs to the protein kinase superfamily. Ser/Thr protein kinase family.

Contains 24 LRR (leucine-rich) repeats.

Contains 1 protein kinase domain.

Sequence caution

The sequence AAG12526.1 differs from that shown. Reason: Erroneous gene model prediction.

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Signal peptide1 – 2121 Potential
Chain22 – 10721051Probable LRR receptor-like serine/threonine-protein kinase At1g34110
PRO_0000387526

Regions

Topological domain22 – 706685Extracellular Potential
Transmembrane707 – 72721Helical; Potential
Topological domain728 – 1072345Cytoplasmic Potential
Repeat90 – 11324LRR 1
Repeat114 – 13825LRR 2
Repeat140 – 16223LRR 3
Repeat164 – 18522LRR 4
Repeat187 – 21125LRR 5
Repeat212 – 23423LRR 6
Repeat235 – 25925LRR 7
Repeat260 – 28324LRR 8
Repeat285 – 30723LRR 9
Repeat308 – 33124LRR 10
Repeat332 – 35524LRR 11
Repeat356 – 37924LRR 12
Repeat381 – 40222LRR 13
Repeat403 – 42725LRR 14
Repeat429 – 45123LRR 15
Repeat452 – 47524LRR 16
Repeat477 – 49923LRR 17
Repeat500 – 52324LRR 18
Repeat524 – 54623LRR 19
Repeat548 – 57124LRR 20
Repeat572 – 59524LRR 21
Repeat597 – 61923LRR 22
Repeat620 – 64223LRR 23
Repeat643 – 66725LRR 24
Domain772 – 1067296Protein kinase
Nucleotide binding778 – 7869ATP By similarity

Sites

Active site9001Proton acceptor By similarity
Binding site8001ATP By similarity

Amino acid modifications

Glycosylation801N-linked (GlcNAc...) Potential
Glycosylation971N-linked (GlcNAc...) Potential
Glycosylation1021N-linked (GlcNAc...) Potential
Glycosylation1761N-linked (GlcNAc...) Potential
Glycosylation2131N-linked (GlcNAc...) Potential
Glycosylation3061N-linked (GlcNAc...) Potential
Glycosylation3541N-linked (GlcNAc...) Potential
Glycosylation4021N-linked (GlcNAc...) Potential
Glycosylation4981N-linked (GlcNAc...) Potential
Glycosylation5461N-linked (GlcNAc...) Potential
Glycosylation6501N-linked (GlcNAc...) Potential
Glycosylation6551N-linked (GlcNAc...) Potential

Sequences

Sequence LengthMass (Da)Tools
C0LGF5 [UniParc].

Last modified November 3, 2009. Version 2.
Checksum: 3A5348584E41C766

FASTA1,072116,725
        10         20         30         40         50         60 
MERERSNFFF LFLFCSWVSM AQPTLSLSSD GQALLSLKRP SPSLFSSWDP QDQTPCSWYG 

        70         80         90        100        110        120 
ITCSADNRVI SVSIPDTFLN LSSIPDLSSL SSLQFLNLSS TNLSGPIPPS FGKLTHLRLL 

       130        140        150        160        170        180 
DLSSNSLSGP IPSELGRLST LQFLILNANK LSGSIPSQIS NLFALQVLCL QDNLLNGSIP 

       190        200        210        220        230        240 
SSFGSLVSLQ QFRLGGNTNL GGPIPAQLGF LKNLTTLGFA ASGLSGSIPS TFGNLVNLQT 

       250        260        270        280        290        300 
LALYDTEISG TIPPQLGLCS ELRNLYLHMN KLTGSIPKEL GKLQKITSLL LWGNSLSGVI 

       310        320        330        340        350        360 
PPEISNCSSL VVFDVSANDL TGDIPGDLGK LVWLEQLQLS DNMFTGQIPW ELSNCSSLIA 

       370        380        390        400        410        420 
LQLDKNKLSG SIPSQIGNLK SLQSFFLWEN SISGTIPSSF GNCTDLVALD LSRNKLTGRI 

       430        440        450        460        470        480 
PEELFSLKRL SKLLLLGNSL SGGLPKSVAK CQSLVRLRVG ENQLSGQIPK EIGELQNLVF 

       490        500        510        520        530        540 
LDLYMNHFSG GLPYEISNIT VLELLDVHNN YITGDIPAQL GNLVNLEQLD LSRNSFTGNI 

       550        560        570        580        590        600 
PLSFGNLSYL NKLILNNNLL TGQIPKSIKN LQKLTLLDLS YNSLSGEIPQ ELGQVTSLTI 

       610        620        630        640        650        660 
NLDLSYNTFT GNIPETFSDL TQLQSLDLSS NSLHGDIKVL GSLTSLASLN ISCNNFSGPI 

       670        680        690        700        710        720 
PSTPFFKTIS TTSYLQNTNL CHSLDGITCS SHTGQNNGVK SPKIVALTAV ILASITIAIL 

       730        740        750        760        770        780 
AAWLLILRNN HLYKTSQNSS SSPSTAEDFS YPWTFIPFQK LGITVNNIVT SLTDENVIGK 

       790        800        810        820        830        840 
GCSGIVYKAE IPNGDIVAVK KLWKTKDNNE EGESTIDSFA AEIQILGNIR HRNIVKLLGY 

       850        860        870        880        890        900 
CSNKSVKLLL YNYFPNGNLQ QLLQGNRNLD WETRYKIAIG AAQGLAYLHH DCVPAILHRD 

       910        920        930        940        950        960 
VKCNNILLDS KYEAILADFG LAKLMMNSPN YHNAMSRVAG SYGYIAPEYG YTMNITEKSD 

       970        980        990       1000       1010       1020 
VYSYGVVLLE ILSGRSAVEP QIGDGLHIVE WVKKKMGTFE PALSVLDVKL QGLPDQIVQE 

      1030       1040       1050       1060       1070 
MLQTLGIAMF CVNPSPVERP TMKEVVTLLM EVKCSPEEWG KTSQPLIKPS SS

« Hide

References

« Hide 'large scale' references
[1]"Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana."
Theologis A., Ecker J.R., Palm C.J., Federspiel N.A., Kaul S., White O., Alonso J., Altafi H., Araujo R., Bowman C.L., Brooks S.Y., Buehler E., Chan A., Chao Q., Chen H., Cheuk R.F., Chin C.W., Chung M.K. expand/collapse author list , Conn L., Conway A.B., Conway A.R., Creasy T.H., Dewar K., Dunn P., Etgu P., Feldblyum T.V., Feng J.-D., Fong B., Fujii C.Y., Gill J.E., Goldsmith A.D., Haas B., Hansen N.F., Hughes B., Huizar L., Hunter J.L., Jenkins J., Johnson-Hopson C., Khan S., Khaykin E., Kim C.J., Koo H.L., Kremenetskaia I., Kurtz D.B., Kwan A., Lam B., Langin-Hooper S., Lee A., Lee J.M., Lenz C.A., Li J.H., Li Y.-P., Lin X., Liu S.X., Liu Z.A., Luros J.S., Maiti R., Marziali A., Militscher J., Miranda M., Nguyen M., Nierman W.C., Osborne B.I., Pai G., Peterson J., Pham P.K., Rizzo M., Rooney T., Rowley D., Sakano H., Salzberg S.L., Schwartz J.R., Shinn P., Southwick A.M., Sun H., Tallon L.J., Tambunga G., Toriumi M.J., Town C.D., Utterback T., Van Aken S., Vaysberg M., Vysotskaia V.S., Walker M., Wu D., Yu G., Fraser C.M., Venter J.C., Davis R.W.
Nature 408:816-820(2000) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: cv. Columbia.
[2]The Arabidopsis Information Resource (TAIR)
Submitted (APR-2011) to the EMBL/GenBank/DDBJ databases
Cited for: GENOME REANNOTATION.
Strain: cv. Columbia.
[3]"Genome-wide cloning and sequence analysis of leucine-rich repeat receptor-like protein kinase genes in Arabidopsis thaliana."
Gou X., He K., Yang H., Yuan T., Lin H., Clouse S.D., Li J.
BMC Genomics 11:19-19(2010) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 20-1072.
Strain: cv. Columbia.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		AC015446 Genomic DNA. Translation: AAG12526.1. Sequence problems.
CP002684 Genomic DNA. Translation: AEE31671.1.
FJ708644 mRNA. Translation: ACN59240.1.
IPIIPI00518973.
PIRB86465.
RefSeqNP_174673.3. NM_103134.3.
UniGeneAt.16189.
At.64854.

3D structure databases

ProteinModelPortalC0LGF5.
SMRC0LGF5. Positions 30-682, 753-1051.
ModBaseSearch...

Protein-protein interaction databases

STRING3702.AT1G34110.1-P.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsAT1G34110.1; AT1G34110.1; AT1G34110.
GeneID840310.
KEGGath:AT1G34110.

Organism-specific databases

GeneFarm622. 55.
TAIRAt1g34110.

Phylogenomic databases

eggNOGCOG4886.
HOGENOMHOG000116551.
InParanoidQ9FX19.
OMALQSFFLW.
PhylomeDBC0LGF5.

Family and domain databases

InterProIPR011009. Kinase-like_dom.
IPR001611. Leu-rich_rpt.
IPR025875. Leu-rich_rpt_4.
IPR013210. LRR-contain_N2.
IPR000719. Prot_kinase_cat_dom.
IPR017441. Protein_kinase_ATP_BS.
IPR008271. Ser/Thr_kinase_AS.
[Graphical view]
PfamPF12799. LRR_4. 2 hits.
PF08263. LRRNT_2. 1 hit.
PF00069. Pkinase. 1 hit.
[Graphical view]
SUPFAMSSF56112. Kinase_like. 1 hit.
PROSITEPS51450. LRR. 16 hits.
PS00107. PROTEIN_KINASE_ATP. 1 hit.
PS50011. PROTEIN_KINASE_DOM. 1 hit.
PS00108. PROTEIN_KINASE_ST. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameY1341_ARATH
AccessionPrimary (citable) accession number: C0LGF5
Secondary accession number(s): Q9FX19
Entry history
Integrated into UniProtKB/Swiss-Prot: November 3, 2009
Last sequence update: November 3, 2009
Last modified: May 1, 2013
This is version 37 of the entry and version 2 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Relevant documents

Arabidopsis thaliana

Arabidopsis thaliana: entries and gene names

SIMILARITY comments

Index of protein domains and families

to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·Documents