C0HBC3 (C0HBC3_SALSA) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Syntaxin-16 EMBL ACN11342.1

Gene names

Name:

STX16 EMBL ACN11342.1

Organism

Salmo salar (Atlantic salmon) EMBL ACN11342.1

Taxonomic identifier

8030 [NCBI]

Taxonomic lineage

cellular organisms › Eukaryota › Opisthokonta › Metazoa › Eumetazoa › Bilateria › Deuterostomia › Chordata › Craniata › Vertebrata › Gnathostomata › Teleostomi › Euteleostomi › Actinopterygii › Actinopteri › Neopterygii › Teleostei › Elopocephala › Clupeocephala › Euteleostei › Protacanthopterygii › Salmoniformes › Salmonoidei › Salmonidae › Salmoninae › Salmo

Protein attributes

Sequence length	306 AA.
Sequence status	Complete.
Protein existence	Evidence at transcript level

General annotation (Comments)

Sequence similarities

Belongs to the syntaxin family. RuleBase RU003858 Contains 1 t-SNARE coiled-coil homology domain. SAAS SAAS000727

Ontologies

Keywords
Domain	Coiled coil SAAS SAAS000727
Gene Ontology (GO)
Biological_process	intracellular protein transport Inferred from electronic annotation. Source: InterPro vesicle-mediated transport Inferred from electronic annotation. Source: InterPro
Cellular_component	membrane Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	C0HBC3 [UniParc]. Last modified May 5, 2009. Version 1. Checksum: F090CDCD0001639F	FASTA	306	35,371
	10 20 30 40 50 60 MATRRLTDAF LLMRNNAIQN RHILAEQELD ELADDRMALV SGIRLDPEAA IGVTKRLPPK 70 80 90 100 110 120 WVDGVDEIQY EITRVRQKMK ELAALHDKHM NRPTLDDSSE EEHAIEITTQ EITQMFHRCQ 130 140 150 160 170 180 RAVTGLQSRC GHCTEQEERL LRNVVSSLAG SLQEQSTNFR HTQSSYLKRM KNREERSKPF 190 200 210 220 230 240 FDSGPLMEED EDIALYDRGF TGDQLVLVEQ NTVMVEERER EVRQIVQSIS DLNEIFRDLA 250 260 270 280 290 300 GMVVEQGTVL DRIDFNVEQS CVKTEEGLKQ LQKAEQYQKK NRKMLVILIL TVIVVVLILI LFGTKF

References

[1]	cGRASP (B.F. Koop & W.S. Davidson) Leong J., von Schalburg K., Cooper G., Moore R., Holt R., Davidson W.S., Koop B.F. Submitted (FEB-2009) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE. Tissue: Brain EMBL ACN11342.1.
[2]	"Salmo salar and Esox lucius full-length cDNA sequences reveal changes in evolutionary pressures on a post-tetraploidization genome." Leong J.S., Jantzen S.G., von Schalburg K.R., Cooper G.A., Messmer A.M., Liao N.Y., Munro S., Moore R., Holt R.A., Jones S.J., Davidson W.S., Koop B.F. BMC Genomics 11:279-279(2010) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE. Tissue: Brain EMBL ACN11342.1.
[3]	cGRASP (B.F. Koop & W.S. Davidson) Submitted (AUG-2010) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE. Tissue: Brain EMBL ACN11342.1.

Cross-references

Sequence databases
EMBL GenBank DDBJ	BT059629 mRNA. Translation: ACN11342.1.
RefSeq	NP_001167314.1. NM_001173843.1.
UniGene	Ssa.44613.
3D structure databases
ModBase	Search...
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
GeneID	100380558.
Organism-specific databases
CTD	8675.
Family and domain databases
InterPro	IPR006012. Syntaxin/epimorphin_CS. IPR006011. Syntaxin_N. IPR010989. t-SNARE. IPR000727. T_SNARE_dom. [Graphical view]
Pfam	PF05739. SNARE. 1 hit. PF00804. Syntaxin. 1 hit. [Graphical view]
SMART	SM00397. t_SNARE. 1 hit. [Graphical view]
SUPFAM	SSF47661. t-snare. 1 hit.
PROSITE	PS00914. SYNTAXIN. 1 hit. PS50192. T_SNARE. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

C0HBC3_SALSA

Accession

Primary (citable) accession number: C0HBC3

Entry history

Integrated into UniProtKB/TrEMBL:	May 5, 2009
Last sequence update:	May 5, 2009
Last modified:	April 3, 2013
This is version 19 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)