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Protein

Uncharacterized protein YokU

Gene

yokU

Organism
Bacillus subtilis (strain 168)
Status
Reviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

Enzyme and pathway databases

BioCyciBSUB:BSU19689-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Uncharacterized protein YokU
Gene namesi
Name:yokU
Ordered Locus Names:BSU19689
OrganismiBacillus subtilis (strain 168)
Taxonomic identifieri224308 [NCBI]
Taxonomic lineageiBacteriaFirmicutesBacilliBacillalesBacillaceaeBacillus
ProteomesiUP000001570 Componenti: Chromosome

Organism-specific databases

GenoListiBSU19689.

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 9292Uncharacterized protein YokUPRO_0000380080Add
BLAST

Interactioni

Protein-protein interaction databases

STRINGi224308.BSU19689.

Family & Domainsi

Phylogenomic databases

eggNOGiNOG287725.
HOGENOMiHOG000089710.
OMAiRNYFDFS.
OrthoDBiEOG6NKR3C.

Family and domain databases

InterProiIPR022451. CHP03829_YokU.
IPR022453. Znf_YgiT-type.
[Graphical view]
TIGRFAMsiTIGR03831. YgiT_finger. 1 hit.
TIGR03829. YokU_near_AblA. 1 hit.

Sequencei

Sequence statusi: Complete.

C0H434-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKTCEWCGEL EAVPGRNTVY WELPDGTRAI ELTDTPAMVC SSCGMTYQEE
60 70 80 90
NTVKEIEDQL LLIQTKKLPE SLTYQQLMET ERILKRNYFD FS
Length:92
Mass (Da):10,703
Last modified:May 5, 2009 - v1
Checksum:i940C052312DBA37E
GO

Sequence cautioni

The sequence AAB81160.1 differs from that shown. Reason: Erroneous initiation. Curated

Experimental Info

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Sequence conflicti46 – 461T → I in AAB81160 (PubMed:9734814).Curated

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AF006665 Genomic DNA. Translation: AAB81160.1. Different initiation.
AL009126 Genomic DNA. Translation: CAX52642.1.
RefSeqiWP_004399539.1. NZ_JNCM01000036.1.
YP_003097745.1. NC_000964.3.

Genome annotation databases

EnsemblBacteriaiCAX52642; CAX52642; BSU19689.
GeneIDi8303010.
KEGGibsu:BSU19689.
PATRICi18975795. VBIBacSub10457_2088.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AF006665 Genomic DNA. Translation: AAB81160.1. Different initiation.
AL009126 Genomic DNA. Translation: CAX52642.1.
RefSeqiWP_004399539.1. NZ_JNCM01000036.1.
YP_003097745.1. NC_000964.3.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi224308.BSU19689.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiCAX52642; CAX52642; BSU19689.
GeneIDi8303010.
KEGGibsu:BSU19689.
PATRICi18975795. VBIBacSub10457_2088.

Organism-specific databases

GenoListiBSU19689.

Phylogenomic databases

eggNOGiNOG287725.
HOGENOMiHOG000089710.
OMAiRNYFDFS.
OrthoDBiEOG6NKR3C.

Enzyme and pathway databases

BioCyciBSUB:BSU19689-MONOMER.

Family and domain databases

InterProiIPR022451. CHP03829_YokU.
IPR022453. Znf_YgiT-type.
[Graphical view]
TIGRFAMsiTIGR03831. YgiT_finger. 1 hit.
TIGR03829. YokU_near_AblA. 1 hit.
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "Sequence analysis of the Bacillus subtilis 168 chromosome region between the sspC and odhA loci (184 degrees-180 degrees)."
    Ghim S.-Y., Choi S.-K., Shin B.-S., Jeong Y.-M., Sorokin A., Ehrlich S.D., Park S.-H.
    DNA Res. 5:195-201(1998) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
    Strain: 168.
  2. "The complete genome sequence of the Gram-positive bacterium Bacillus subtilis."
    Kunst F., Ogasawara N., Moszer I., Albertini A.M., Alloni G., Azevedo V., Bertero M.G., Bessieres P., Bolotin A., Borchert S., Borriss R., Boursier L., Brans A., Braun M., Brignell S.C., Bron S., Brouillet S., Bruschi C.V.
    , Caldwell B., Capuano V., Carter N.M., Choi S.-K., Codani J.-J., Connerton I.F., Cummings N.J., Daniel R.A., Denizot F., Devine K.M., Duesterhoeft A., Ehrlich S.D., Emmerson P.T., Entian K.-D., Errington J., Fabret C., Ferrari E., Foulger D., Fritz C., Fujita M., Fujita Y., Fuma S., Galizzi A., Galleron N., Ghim S.-Y., Glaser P., Goffeau A., Golightly E.J., Grandi G., Guiseppi G., Guy B.J., Haga K., Haiech J., Harwood C.R., Henaut A., Hilbert H., Holsappel S., Hosono S., Hullo M.-F., Itaya M., Jones L.-M., Joris B., Karamata D., Kasahara Y., Klaerr-Blanchard M., Klein C., Kobayashi Y., Koetter P., Koningstein G., Krogh S., Kumano M., Kurita K., Lapidus A., Lardinois S., Lauber J., Lazarevic V., Lee S.-M., Levine A., Liu H., Masuda S., Mauel C., Medigue C., Medina N., Mellado R.P., Mizuno M., Moestl D., Nakai S., Noback M., Noone D., O'Reilly M., Ogawa K., Ogiwara A., Oudega B., Park S.-H., Parro V., Pohl T.M., Portetelle D., Porwollik S., Prescott A.M., Presecan E., Pujic P., Purnelle B., Rapoport G., Rey M., Reynolds S., Rieger M., Rivolta C., Rocha E., Roche B., Rose M., Sadaie Y., Sato T., Scanlan E., Schleich S., Schroeter R., Scoffone F., Sekiguchi J., Sekowska A., Seror S.J., Serror P., Shin B.-S., Soldo B., Sorokin A., Tacconi E., Takagi T., Takahashi H., Takemaru K., Takeuchi M., Tamakoshi A., Tanaka T., Terpstra P., Tognoni A., Tosato V., Uchiyama S., Vandenbol M., Vannier F., Vassarotti A., Viari A., Wambutt R., Wedler E., Wedler H., Weitzenegger T., Winters P., Wipat A., Yamamoto H., Yamane K., Yasumoto K., Yata K., Yoshida K., Yoshikawa H.-F., Zumstein E., Yoshikawa H., Danchin A.
    Nature 390:249-256(1997) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: 168.

Entry informationi

Entry nameiYOKU_BACSU
AccessioniPrimary (citable) accession number: C0H434
Secondary accession number(s): O30470
Entry historyi
Integrated into UniProtKB/Swiss-Prot: July 28, 2009
Last sequence update: May 5, 2009
Last modified: May 27, 2015
This is version 27 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Bacillus subtilis
    Bacillus subtilis (strain 168): entries, gene names and cross-references to SubtiList

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.