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Protein
Submitted name:

DNA-directed RNA polymerase II subunit, putative

Gene

Cd36_19230

Organism
Candida dubliniensis (strain CD36 / ATCC MYA-646 / CBS 7987 / NCPF 3949 / NRRL Y-17841) (Yeast)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

NucleotidyltransferaseImported, Transferase

Keywords - Biological processi

Transcription

Names & Taxonomyi

Protein namesi
Submitted name:
DNA-directed RNA polymerase II subunit, putativeImported (EC:2.7.7.6Imported)
Gene namesi
Ordered Locus Names:Cd36_19230Imported
ORF Names:CD36_19230Imported
OrganismiCandida dubliniensis (strain CD36 / ATCC MYA-646 / CBS 7987 / NCPF 3949 / NRRL Y-17841) (Yeast)Imported
Taxonomic identifieri573826 [NCBI]
Taxonomic lineageiEukaryotaFungiDikaryaAscomycotaSaccharomycotinaSaccharomycetesSaccharomycetalesDebaryomycetaceaeCandida/Lodderomyces cladeCandida
ProteomesiUP000002605 Componenti: Chromosome 2

Organism-specific databases

CGDiCAL0000169595. Cd36_19230.

Subcellular locationi

Keywords - Cellular componenti

DNA-directed RNA polymeraseImported

Interactioni

Protein-protein interaction databases

STRINGi573826.XP_002418403.1.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini145 – 269125RPOL4cInterPro annotationAdd
BLAST

Coiled coil

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Coiled coili62 – 8221Sequence analysisAdd
BLAST

Keywords - Domaini

Coiled coilSequence analysis

Phylogenomic databases

eggNOGiCOG5250. LUCA.
KOG2351. Eukaryota.
HOGENOMiHOG000195281.
KOiK03012.
OrthoDBiEOG7NW6NW.

Family and domain databases

InterProiIPR010997. HRDC-like.
IPR005574. RNA_pol_II_Rpb4.
IPR006590. RNA_pol_II_Rpb4_core.
[Graphical view]
PfamiPF03874. RNA_pol_Rpb4. 1 hit.
[Graphical view]
SMARTiSM00657. RPOL4c. 1 hit.
[Graphical view]
SUPFAMiSSF47819. SSF47819. 2 hits.

Sequencei

Sequence statusi: Complete.

B9WBD3-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MNVSTSALGV RRRKVATQNI DDEENAAVLK LGPEFQLNQI TNDGEQQQLI
60 70 80 90 100
ALNLSEARLL IRAALKERKH NKNKNKKKKS NNNNNINNKS RLNGNGSNDI
110 120 130 140 150
NNNGSGNGNG DITNDGNNIS NNDTNTNTNT NEDNINGDKG NNEKEEDEDD
160 170 180 190 200
DDDDDDDDDD DENSKEDEIS NMELAGPNSN EIVHKTLNFL TNFARFKNRS
210 220 230 240 250
SCETVEKLLN DFSDHCNESL HPFELAQLGT LECEDPEEAK SLIPSLQNKV
260
SDVQLQTLLT ELRKYQTLS
Length:269
Mass (Da):30,047
Last modified:March 24, 2009 - v1
Checksum:i32BE09F42508A7C7
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
FM992689 Genomic DNA. Translation: CAX43703.1.
RefSeqiXP_002418403.1. XM_002418358.1.

Genome annotation databases

EnsemblFungiiCAX43703; CAX43703; CD36_19230.
GeneIDi8045954.
KEGGicdu:CD36_19230.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
FM992689 Genomic DNA. Translation: CAX43703.1.
RefSeqiXP_002418403.1. XM_002418358.1.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi573826.XP_002418403.1.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblFungiiCAX43703; CAX43703; CD36_19230.
GeneIDi8045954.
KEGGicdu:CD36_19230.

Organism-specific databases

CGDiCAL0000169595. Cd36_19230.

Phylogenomic databases

eggNOGiCOG5250. LUCA.
KOG2351. Eukaryota.
HOGENOMiHOG000195281.
KOiK03012.
OrthoDBiEOG7NW6NW.

Family and domain databases

InterProiIPR010997. HRDC-like.
IPR005574. RNA_pol_II_Rpb4.
IPR006590. RNA_pol_II_Rpb4_core.
[Graphical view]
PfamiPF03874. RNA_pol_Rpb4. 1 hit.
[Graphical view]
SMARTiSM00657. RPOL4c. 1 hit.
[Graphical view]
SUPFAMiSSF47819. SSF47819. 2 hits.
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: CD36 / ATCC MYA-646 / CBS 7987 / NCPF 3949 / NRRL Y-17841Imported.

Entry informationi

Entry nameiB9WBD3_CANDC
AccessioniPrimary (citable) accession number: B9WBD3
Entry historyi
Integrated into UniProtKB/TrEMBL: March 24, 2009
Last sequence update: March 24, 2009
Last modified: January 20, 2016
This is version 41 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.