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B9T8T0 (B9T8T0_RICCO) Unreviewed, UniProtKB/TrEMBL

Last modified March 6, 2013. Version 30. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesRecommended name:
rRNA N-glycosidase RuleBase RU004915
EC=3.2.2.22 RuleBase RU004915
Gene names
ORF Names:RCOM_2159910 EMBL EEF27734.1
OrganismRicinus communis (Castor bean) [Complete proteome]
Taxonomic identifier3988 [NCBI]
Taxonomic lineageEukaryota › Viridiplantae › Streptophyta › Embryophyta › Tracheophyta › Spermatophyta › Magnoliophyta › eudicotyledons › core eudicotyledons › rosids › fabids › Malpighiales › Euphorbiaceae › Acalyphoideae › Acalypheae › Ricinus

Protein attributes

Sequence length576 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Catalytic activity

Endohydrolysis of the N-glycosidic bond at one specific adenosine on the 28S rRNA. RuleBase RU004915 SAAS SAAS016138

Sequence similarities

Belongs to the ribosome-inactivating protein family. RuleBase RU004915

Sequences

Sequence LengthMass (Da)Tools
B9T8T0 [UniParc].

Last modified March 24, 2009. Version 1.
Checksum: C14C4B77A8B5470D

FASTA57664,091
        10         20         30         40         50         60 
MKPGGNTIVI WMYAVATWLC FGSTSGWSFT LEDNNIFPKQ YPIINFTTAG ATVQSYTNFI 

        70         80         90        100        110        120 
RAVRGRLTTG ADVRHEIPVL PNRVGLPINQ RFILVELSNH AELSVTLALD VTNAYVVGYR 

       130        140        150        160        170        180 
AGNSAYFFHP DNQEDAEAIT HLFTDVQNRY TFAFGGNYDR LEQLAGNLRE NIELGNGPLE 

       190        200        210        220        230        240 
EAISALYYYS TGGTQLPTLA RSFIICIQMI SEAARFQYIE GEMRTRIRYN RRSAPDPSVI 

       250        260        270        280        290        300 
TLENSWGRLS TAIQESNQGA FASPIQLQRR NGSKFSVYDV SILIPIIALM VYRCAPPPSS 

       310        320        330        340        350        360 
QFSLLIRPVV PNFNADVCMD PEPIVRIVGR NGLCVDVRDG RFHNGNAIQL WPCKSNTDAN 

       370        380        390        400        410        420 
QLWTLKRDNT IRSNGKCLTT YGYSPGVYVM IYDCNTAATD ATRWQIWDNG TIINPRSSLV 

       430        440        450        460        470        480 
LAATSGNSGT TLTVQTNIYA VSQGWLPTNN TQPFVTTIVG LYGLCLQANS GQVWIEDCSS 

       490        500        510        520        530        540 
EKAEQQWALY ADGSIRPQQN RDNCLTSDSN IRETVVKILS CGPASSGQRW MFKNDGTILN 

       550        560        570 
LYSGLVLDVR ASDPSLKQII LYPLHGDPNQ IWLPLF

« Hide

References

[1]"Draft genome sequence of the oilseed species Ricinus communis."
Chan A.P., Crabtree J., Zhao Q., Lorenzi H., Orvis J., Puiu D., Melake-Berhan A., Jones K.M., Redman J., Chen G., Cahoon E.B., Gedil M., Stanke M., Haas B.J., Wortman J.R., Fraser-Liggett C.M., Ravel J., Rabinowicz P.D.
Nat. Biotechnol. 28:951-956(2010) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: cv. Hale.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		EQ975183 Genomic DNA. Translation: EEF27734.1.
RefSeqXP_002534649.1. XM_002534603.1.

3D structure databases

ProteinModelPortalB9T8T0.
SMRB9T8T0. Positions 36-302, 315-576.
ModBaseSearch...

Protein family/group databases

Allergome2803. Ric c RIP.
CAZyCBM13. Carbohydrate-Binding Module Family 13.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

GeneID8287993.
KEGGrcu:RCOM_2159910.

Phylogenomic databases

ProtClustDBCLSN2726328.

Family and domain databases

Gene3D3.40.420.10. 1 hit.
4.10.470.10. 1 hit.
InterProIPR001574. Ribosome_inactivat_prot.
IPR017988. Ribosome_inactivat_prot_CS.
IPR016138. Ribosome_inactivat_prot_sub1.
IPR016139. Ribosome_inactivat_prot_sub2.
IPR017989. Ribosome_inactivat_prot_subgr.
IPR000772. Ricin_B_lectin.
[Graphical view]
PfamPF00652. Ricin_B_lectin. 2 hits.
PF00161. RIP. 1 hit.
[Graphical view]
PRINTSPR00396. SHIGARICIN.
SMARTSM00458. RICIN. 2 hits.
[Graphical view]
SUPFAMSSF56371. Ribosome_inactivat_prot. 1 hit.
SSF50370. RicinB_like. 2 hits.
PROSITEPS50231. RICIN_B_LECTIN. 2 hits.
PS00275. SHIGA_RICIN. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameB9T8T0_RICCO
AccessionPrimary (citable) accession number: B9T8T0
Entry history
Integrated into UniProtKB/TrEMBL: March 24, 2009
Last sequence update: March 24, 2009
Last modified: March 6, 2013
This is version 30 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
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