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B9SMZ3 (B9SMZ3_RICCO) Unreviewed, UniProtKB/TrEMBL

Last modified January 9, 2013. Version 25. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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to top of pageNames·Attributes·General annotation·Ontologies·Sequences·References·Cross-refs·Entry infoCustomize order

Names and origin

Protein namesSubmitted name:
E3 ubiquitin protein ligase upl2, putative EMBL EEF35034.1
Gene names
ORF Names:RCOM_0482820 EMBL EEF35034.1
OrganismRicinus communis (Castor bean) [Complete proteome]
Taxonomic identifier3988 [NCBI]
Taxonomic lineageEukaryota › Viridiplantae › Streptophyta › Embryophyta › Tracheophyta › Spermatophyta › Magnoliophyta › eudicotyledons › core eudicotyledons › rosids › fabids › Malpighiales › Euphorbiaceae › Acalyphoideae › Acalypheae › Ricinus

Protein attributes

Sequence length3666 AA.
Sequence statusComplete.
Protein existencePredicted

General annotation (Comments)

Sequence similarities

Contains 1 HECT (E6AP-type E3 ubiquitin-protein ligase) domain. SAAS SAAS000569

Ontologies

Keywords
   Biological processUbl conjugation pathway SAAS SAAS000569
   Molecular functionLigase EMBL EEF35034.1
   Technical termComplete proteome
Gene Ontology (GO)
   Biological_processprotein ubiquitination

Inferred from electronic annotation. Source: GOC

   Cellular_componentintracellular

Inferred from electronic annotation. Source: InterPro

   Molecular_functionubiquitin-protein ligase activity

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequences

Sequence LengthMass (Da)Tools
B9SMZ3 [UniParc].

Last modified March 24, 2009. Version 1.
Checksum: BC7D13746C5FAC13

FASTA3,666404,686
        10         20         30         40         50         60 
MLVPLFGILS GTKVQPPKIK AFIDKVIQSP LQDIAIPLSG FRWEYSKGNF HHWRPLFLHF 

        70         80         90        100        110        120 
DTYFKTYLSS RNDLLLSDNI SENDCPFPKH AVLQILRVMQ IILENCHNKS SFDGLEHFKH 

       130        140        150        160        170        180 
LLASTDPEVL IATLETLAAL VKINPSKLHG NGKLVGCGSV NSFLLSLAQG WGSKEEGLGL 

       190        200        210        220        230        240 
YSCVMANERS QEEGLSLFPS EVENEHDKSQ NRIGSTLYFE LHGLNAESAG DSGIANCSNL 

       250        260        270        280        290        300 
RVIHMPDLHL RKEDDLLLMK QCIEQYNVPP DLRFSLLTRI RYARAFRSPR ICRLYSRISL 

       310        320        330        340        350        360 
LAFIVLVQSS DANDELTSFF ANEPEYTNEL IRIVRSEETV PGIIRTLAML ALGAQLAAYS 

       370        380        390        400        410        420 
ASHERARILS GSSISFAVGN RMILLNVLQR AVLSLKNSSD PSSLAFVEAL LQFYLLHIVS 

       430        440        450        460        470        480 
SSASGSNVRG SGMVPTFLPL LEDSDPNHMH LVYLAVKALQ KLMDYSSSAV SLLRELGGVE 

       490        500        510        520        530        540 
LLAQRLQIEV HRIIGSSGEN DNSMVIGECS RYNDDHIYSQ KRLIKVLLKA LGSATYAPSN 

       550        560        570        580        590        600 
NTRSLNSHDS SLPSTLSLIY GNADKFGGDI FYSAVTVMSE IIHKDPTCFP TLHEMGLPEA 

       610        620        630        640        650        660 
FLSSVVAGLL PSPKALTCVP NGLGAICLNA KGLEAVKETS ALRFLVEIFT SKKYVLAMND 

       670        680        690        700        710        720 
AIVPLANAVE ELLRHVSSLR GTGVDIIIEI VGRIASFGDS CSAGSSAKES GNTEMEMDSE 

       730        740        750        760        770        780 
DKQNDGNCCL GGGTEFGTEG ISNEQFIQLC IFHLMVLLHR TMENSETCRL FVEKSGIEAL 

       790        800        810        820        830        840 
LKLLLRPSFV QSSEGMSIAL HSTMVFKGFT QHHSAPLARA FCCSLREHLK KALAGFDAVS 

       850        860        870        880        890        900 
GSFLLDSRAT PDGGIFSSLF LVEFLLFLAA SKDNRWVSAL LTDFGNGSKD VLEDIGRVHR 

       910        920        930        940        950        960 
EVLWQIALLE DAKLEMEDDG TVSSADSQQS EVNTNETEDQ RFNSFRQFLD PLLRRRTSGW 

       970        980        990       1000       1010       1020 
SIESQVFDLI NLYRDLGRAT GFPQRLSSDG SLNRFGSIYQ PHHSESSDAA GAISKKEYDR 

      1030       1040       1050       1060       1070       1080 
QRSYYTSCCD MVRSLSFHIM HLFQELGKAM LLPSRRRDDT VNVSPSSKVV AGTFASIALD 

      1090       1100       1110       1120       1130       1140 
HMNFGGHANS SGSEVSISSK CRYFGKVIDF IDGILLDRPD SCNPVLLNCL YGRGVVQSVL 

      1150       1160       1170       1180       1190       1200 
TTFEATSQLL FAVNRAPASP METDDANAKQ EDKEDADHSW IYGPLASYGK LMDHLVTSSL 

      1210       1220       1230       1240       1250       1260 
ILSPFTKHLL AQPLGNGGSP FPRDAETFVK VLQSMVLKAV LPVWTHPQLT DCSNDFISTV 

      1270       1280       1290       1300       1310       1320 
ISIIRHVYSG VEVKNTNSNN SARITGPPPN EAAISTIVEM GFSRSRAEEA LRQVGSNSVE 

      1330       1340       1350       1360       1370       1380 
LAMEWLFSHP EETQEDDELA RALAMSLGNS ESDAKEDNSN ANSQQLEEEM VQLPPVDELL 

      1390       1400       1410       1420       1430       1440 
STCIKLLQVK EPLAFPVRDL LVLICSQGDG QYRSNVISFI LDKIKDRNLV SDGRNSTILS 

      1450       1460       1470       1480       1490       1500 
ALFHVLALIL HEDAVAREIA LKSNLVKNVS DLLSQWDSGL VEKEKHQVPK WVTTAFLAVD 

      1510       1520       1530       1540       1550       1560 
RLLQVDQKLN SEIVEQLKRD DLNTQQTSIS INEDKQNKLQ SALGSPMEQI DAEEQKRLIQ 

      1570       1580       1590       1600       1610       1620 
IACHCIKNQL PSETMHAVLQ LCSTLTRTHS IAVCFLEAEG VSSLLNLPTS SLFPGFDNIA 

      1630       1640       1650       1660       1670       1680 
ATIIRHVLED PQTLQQAMES EIKHSLVAAA NRHSNGRVTP RNFLLNLNSV ISRDPVIFMQ 

      1690       1700       1710       1720       1730       1740 
AAQSVCQVEM VGERPYVVLL KDREKDRSKE KEKEKEKALE KDKSHTADGR TTLGNMNTLA 

      1750       1760       1770       1780       1790       1800 
PGNIHGKFHD SISKSAKVHR KSPQSFVTVI ELLLDVVCSF VPPSKDEAVI DVPHDVPSST 

      1810       1820       1830       1840       1850       1860 
DMDVDVAAMK GKGKAIATVS EENVSNSQEA SAMLAKVVFI LKLLTEIVLM YSSSIHVLLR 

      1870       1880       1890       1900       1910       1920 
RDAEISSCRG PHQKGSAGLC TGGIFQHILH KFIPYSRNLK KERKVDGDWR HKLATRASQL 

      1930       1940       1950       1960       1970       1980 
LVASCVRSTE ARRRVFTEIS SIFSDFVDSC NGSSRSPTND IQTYVDLLND VLAARTPTGS 

      1990       2000       2010       2020       2030       2040 
YISSEASATF IDVGLVRSLT RTLEVLDLDH SDSPKLVTGL IKALELVTKE HVNTADSNSG 

      2050       2060       2070       2080       2090       2100 
KSENSAKPPQ SQSGRAENVA DISQSVEIVP QSNHDSVSAD HIESFNVVQN FGRSEAATDD 

      2110       2120       2130       2140       2150       2160 
MEHDQDLDGG FAPAPDDDYM QETPEDMRGP ENGMDTVGIR FEIQPHGQEN IDEDEDEDMS 

      2170       2180       2190       2200       2210       2220 
GDEGDEVDED EDEDDDDEDD EEHNDLEEDE VHHLPHPDTD QDDHDIDDDE FDEELLEEDD 

      2230       2240       2250       2260       2270       2280 
EDEEEDDDGV ILRLEEGING INVFDHIEVF GRDHSFPNET LHVMPVEVFG SRRQGRTTSI 

      2290       2300       2310       2320       2330       2340 
YSLLGRSGDS AAPSRHPLLV GPSSSHSAAS RQLDNARDVG FSDRNLENTS SQLDTIFRSL 

      2350       2360       2370       2380       2390       2400 
RNGRHGHRLN LWSQDNQQSG GSSSSLPQGL EELLVSQLRR PAPEKSSDQN TSSVEPTSNG 

      2410       2420       2430       2440       2450       2460 
EAAQLHEPDA AQPDVPVENN VNNGSSNALP PSSVAVAGSG NSEMRPVTSD SHSQSIEMQF 

      2470       2480       2490       2500       2510       2520 
EQNDATVRDV EAVSQESSGS GATLGESLRS LDVEIGSADG HDDGGERQGS ADRMHLDPQA 

      2530       2540       2550       2560       2570       2580 
TRTRRTNVSF GNSTAVSGRD ASLHSVTEVP ENSSREADQD GPTVEQEIGG EAGSGSIDPA 

      2590       2600       2610       2620       2630       2640 
FLDALPEELR AEVLSAQQGQ VAQPTNAEQQ NSGDIDPEFL AALPPDIRAE VLAQQQAQRL 

      2650       2660       2670       2680       2690       2700 
HQSHELEGQP VEMDTVSIIA TFPSDLREEV LLTSSDAILA NLTPALVAEA NMLRERFAHR 

      2710       2720       2730       2740       2750       2760 
YHNRTLFGMY PRSRRGESSR RGEGIGYSLE RAGTGSRRSI TTKLVEADGA PLVETESLKA 

      2770       2780       2790       2800       2810       2820 
MIRVLRIVQP LYKGPLQKLL LNLCAHGETR TSLVKILMDM LMLDTRKPAN YLNAAEPSYR 

      2830       2840       2850       2860       2870       2880 
LYACQSNVMY SRPQTFDGVP PLVSRRILET LTYLARNHPY VARILLQSRL PLPALQQAEN 

      2890       2900       2910       2920       2930       2940 
SDKLRGKAVM VVEEFQDNPK HHEEGYISIA LLLSLLNQPL YSRSIAHLEQ LLNLLEVIID 

      2950       2960       2970       2980       2990       3000 
SAECKQSLLD KSGAATERPS PHQMSTSDAR VNTEVGSVSA GVAISSSTAI DSSKSTTPGA 

      3010       3020       3030       3040       3050       3060 
NNECDTQSVL LNLPQAELRL LCSFLAREGL SDNAYTLVAE VMKKLVASAP MHSHLFVTEL 

      3070       3080       3090       3100       3110       3120 
ADAVQNLTKS AMNELRLFGE EVKALLRTTS SDGAAILRVL QALSSLVASL VEKEKDQQIL 

      3130       3140       3150       3160       3170       3180 
TEKEHSASLS QLSDINAALE PLWLELSTCI SKIEGYSESA PDLLIPRTST SKPSGVTPPL 

      3190       3200       3210       3220       3230       3240 
PAGSQNILPY IESFFVMCEK LHPTRPGSGH DYGAVSEVED LSTPAAQQKP SGPVLKIDEK 

      3250       3260       3270       3280       3290       3300 
NVAFVKFSEK HRKLLNAFIR QNPGLLEKSF SLMLKVPRFV DFDNKRSHFR SKIKHQHDHH 

      3310       3320       3330       3340       3350       3360 
QSPLRISVRR AYILEDSYNQ LRMRSTQDLK GRLTVHFQGE EGIDAGGLTR EWYQLLSRVI 

      3370       3380       3390       3400       3410       3420 
FDKGALLFTT VGNESTFQPN PNSVYQTEHL SYFKFIGRVV GKALFDGQLL DVHFTRSFYK 

      3430       3440       3450       3460       3470       3480 
HILGAKVTYH DIEAIDPDYF KNLKWMLEND ISDVLDLTFS IDADEEKLIL YERTEVTDHE 

      3490       3500       3510       3520       3530       3540 
LIPGGRNIKV TEENKHQYVD LVAEHRLTTA IRPQINAFME GFNELILRDL ISIFNDKELE 

      3550       3560       3570       3580       3590       3600 
LLISGLPDID LDDMRANTEY SGYSAASPVI QWFWEVVQGF SKEDKARLLQ FVTGTSKVPL 

      3610       3620       3630       3640       3650       3660 
EGFSALQGIS GSQKFQIHKA YGSPDHLPSA HTCFNQLDLP EYPSKQHLEE RLLLAIHEAN 


EGFGFG

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References

[1]"Draft genome sequence of the oilseed species Ricinus communis."
Chan A.P., Crabtree J., Zhao Q., Lorenzi H., Orvis J., Puiu D., Melake-Berhan A., Jones K.M., Redman J., Chen G., Cahoon E.B., Gedil M., Stanke M., Haas B.J., Wortman J.R., Fraser-Liggett C.M., Ravel J., Rabinowicz P.D.
Nat. Biotechnol. 28:951-956(2010) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: cv. Hale.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		EQ974039 Genomic DNA. Translation: EEF35034.1.
RefSeqXP_002527362.1. XM_002527316.1.

3D structure databases

ModBaseSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

GeneID8280345.
KEGGrcu:RCOM_0482820.

Phylogenomic databases

KOK10592.
ProtClustDBCLSN2682677.

Family and domain databases

InterProIPR016024. ARM-type_fold.
IPR025527. DUF4414.
IPR010309. E3_Ub_ligase_DUF908.
IPR010314. E3_Ub_ligase_DUF913.
IPR000569. HECT.
IPR009060. UBA-like.
IPR000449. UBA/transl_elong_EF1B_N.
IPR015940. UBA/transl_elong_EF1B_N_euk.
IPR003903. Ubiquitin-int_motif.
[Graphical view]
PfamPF14377. DUF4414. 1 hit.
PF06012. DUF908. 1 hit.
PF06025. DUF913. 1 hit.
PF00632. HECT. 1 hit.
PF00627. UBA. 1 hit.
[Graphical view]
SMARTSM00119. HECTc. 1 hit.
SM00165. UBA. 1 hit.
SM00726. UIM. 1 hit.
[Graphical view]
SUPFAMSSF48371. ARM-type_fold. 2 hits.
SSF56204. HECT. 1 hit.
SSF46934. UBA_like. 1 hit.
PROSITEPS50237. HECT. 1 hit.
PS50030. UBA. 1 hit.
PS50330. UIM. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameB9SMZ3_RICCO
AccessionPrimary (citable) accession number: B9SMZ3
Entry history
Integrated into UniProtKB/TrEMBL: March 24, 2009
Last sequence update: March 24, 2009
Last modified: January 9, 2013
This is version 25 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
to top of pageNames·Attributes·General annotation·Ontologies·Sequences·References·Cross-refs·Entry info