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B9SCJ7

- B9SCJ7_RICCO

UniProt

B9SCJ7 - B9SCJ7_RICCO

Protein

DNA ligase

Gene

RCOM_0474620

Organism
Ricinus communis (Castor bean)
Status
Unreviewed - Annotation score: 2 out of 5- Protein inferred from homologyi
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    • History
      Entry version 34 (01 Oct 2014)
      Sequence version 1 (24 Mar 2009)
      Previous versions | rss
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    Functioni

    Catalytic activityi

    ATP + (deoxyribonucleotide)(n) + (deoxyribonucleotide)(m) = AMP + diphosphate + (deoxyribonucleotide)(n+m).UniRule annotation

    GO - Molecular functioni

    1. ATP binding Source: UniProtKB-KW
    2. DNA binding Source: InterPro
    3. DNA ligase (ATP) activity Source: UniProtKB-EC

    GO - Biological processi

    1. DNA ligation involved in DNA repair Source: InterPro
    2. DNA recombination Source: UniProtKB-KW
    3. DNA replication Source: UniProtKB-KW

    Keywords - Molecular functioni

    LigaseUniRule annotationImported

    Keywords - Biological processi

    DNA damage, DNA recombinationUniRule annotation, DNA repairUniRule annotation, DNA replicationUniRule annotation

    Keywords - Ligandi

    ATP-bindingUniRule annotation, Nucleotide-binding

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    DNA ligaseUniRule annotation (EC:6.5.1.1UniRule annotation)
    Gene namesi
    ORF Names:RCOM_0474620Imported
    OrganismiRicinus communis (Castor bean)Imported
    Taxonomic identifieri3988 [NCBI]
    Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsfabidsMalpighialesEuphorbiaceaeAcalyphoideaeAcalypheaeRicinus
    ProteomesiUP000008311: Unassembled WGS sequence

    Family & Domainsi

    Sequence similaritiesi

    Phylogenomic databases

    KOiK10747.

    Family and domain databases

    Gene3Di1.10.3260.10. 1 hit.
    2.40.50.140. 1 hit.
    InterProiIPR000977. DNA_ligase_ATP-dep.
    IPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR016059. DNA_ligase_ATP-dep_CS.
    IPR012308. DNA_ligase_ATP-dep_N.
    IPR012340. NA-bd_OB-fold.
    [Graphical view]
    PfamiPF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF04675. DNA_ligase_A_N. 1 hit.
    [Graphical view]
    SUPFAMiSSF117018. SSF117018. 1 hit.
    SSF50249. SSF50249. 1 hit.
    TIGRFAMsiTIGR00574. dnl1. 1 hit.
    PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
    PS00333. DNA_LIGASE_A2. 1 hit.
    PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    B9SCJ7-1 [UniParc]FASTAAdd to Basket

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    MSTPRSAFDV LMKKSAANKK SQSSSPKKRK SPDSQIAPKT LINSTQSLQQ    50
    QPPNTIQHKE TPQKPQDSSL SLGEEKKVDT AKKQRLAIAE MKGKIKSLMK 100
    NPKDFDPNEV VYWEKGENVP FIFVCSAFEY LEDEKEKGRG NITNVACNML 150
    RSVMSTTPDD LLALVYLLAN RVAPAHEGVE LGIGEAMIIK ALAEAFGRTE 200
    KQVKKEYEGT GDLGRVAQAS RSSQSMMRRP EPLTVSKVFN TFQLIAKDSG 250
    KDSQDKKKNR IKALLVAATD CEPQYLIRLL QGKLRINLAG QTLLAALGQA 300
    AVFSENHCTV PSNIQSPLDE AAKIVKQVYS VLPVYDRIVP ALLNDGVWNL 350
    PKTCSFTPGV PVGPMLAKPA KSVTEIVEKF QGKFTCEYKY DGERAQIHFL 400
    ENGSVEIYSR NAERNTGKYP DVVVAISRSK KSSVKSFVLD CEIVAYNRGE 450
    KKILPFQILS TRPRKNVVMS DIKVDVCIYA FDMLYLNGKP LIEEQLEDRR 500
    KLLYDSFEED PEHFQFATAI TSNDLEEIQK FLDAAVDASC EGLIIKTLDK 550
    DATYEPSKRS NNWVKLKKDY IESIGDSLDL VPIAAYHGRG KRTGVYGAFL 600
    LACYNSSTEE FESICKIGTG FSEQVLEERS NSLRAKVVPQ PKSYYRYEEK 650
    IKPDVWFEPT EVWEVKAADL TISPVHRAAV GIVNSDKGIS LRFPRLMRVR 700
    EDKSPEEATS SDQVADMYNA QKQNQPKVTQ ADSDDDQ 737
    Length:737
    Mass (Da):82,467
    Last modified:March 24, 2009 - v1
    Checksum:iD245BEFD7356ECD1
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    EQ973922 Genomic DNA. Translation: EEF38656.1.
    RefSeqiXP_002523716.1. XM_002523670.1.

    Genome annotation databases

    GeneIDi8275235.
    KEGGircu:RCOM_0474620.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    EQ973922 Genomic DNA. Translation: EEF38656.1 .
    RefSeqi XP_002523716.1. XM_002523670.1.

    3D structure databases

    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    GeneIDi 8275235.
    KEGGi rcu:RCOM_0474620.

    Phylogenomic databases

    KOi K10747.

    Family and domain databases

    Gene3Di 1.10.3260.10. 1 hit.
    2.40.50.140. 1 hit.
    InterProi IPR000977. DNA_ligase_ATP-dep.
    IPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR016059. DNA_ligase_ATP-dep_CS.
    IPR012308. DNA_ligase_ATP-dep_N.
    IPR012340. NA-bd_OB-fold.
    [Graphical view ]
    Pfami PF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF04675. DNA_ligase_A_N. 1 hit.
    [Graphical view ]
    SUPFAMi SSF117018. SSF117018. 1 hit.
    SSF50249. SSF50249. 1 hit.
    TIGRFAMsi TIGR00574. dnl1. 1 hit.
    PROSITEi PS00697. DNA_LIGASE_A1. 1 hit.
    PS00333. DNA_LIGASE_A2. 1 hit.
    PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: cv. HaleImported.

    Entry informationi

    Entry nameiB9SCJ7_RICCO
    AccessioniPrimary (citable) accession number: B9SCJ7
    Entry historyi
    Integrated into UniProtKB/TrEMBL: March 24, 2009
    Last sequence update: March 24, 2009
    Last modified: October 1, 2014
    This is version 34 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3