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B9SCJ7

- B9SCJ7_RICCO

UniProt

B9SCJ7 - B9SCJ7_RICCO

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Protein
DNA ligase
Gene
RCOM_0474620
Organism
Ricinus communis (Castor bean)
Status
Unreviewed - Annotation score: 2 out of 5 - Protein inferred from homologyi

Functioni

Catalytic activityi

ATP + (deoxyribonucleotide)(n) + (deoxyribonucleotide)(m) = AMP + diphosphate + (deoxyribonucleotide)(n+m).UniRule annotation

GO - Molecular functioni

  1. ATP binding Source: UniProtKB-KW
  2. DNA binding Source: InterPro
  3. DNA ligase (ATP) activity Source: UniProtKB-EC

GO - Biological processi

  1. DNA ligation involved in DNA repair Source: InterPro
  2. DNA recombination Source: UniProtKB-KW
  3. DNA replication Source: UniProtKB-KW
Complete GO annotation...

Keywords - Molecular functioni

LigaseUniRule annotationImported

Keywords - Biological processi

DNA damage, DNA recombinationUniRule annotation, DNA repairUniRule annotation, DNA replicationUniRule annotation

Keywords - Ligandi

ATP-bindingUniRule annotation, Nucleotide-binding

Names & Taxonomyi

Protein namesi
Recommended name:
DNA ligaseUniRule annotation (EC:6.5.1.1UniRule annotation)
Gene namesi
ORF Names:RCOM_0474620Imported
OrganismiRicinus communis (Castor bean)
Taxonomic identifieri3988 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsfabidsMalpighialesEuphorbiaceaeAcalyphoideaeAcalypheaeRicinus
ProteomesiUP000008311: Unassembled WGS sequence

Family & Domainsi

Sequence similaritiesi

Phylogenomic databases

KOiK10747.

Family and domain databases

Gene3Di1.10.3260.10. 1 hit.
2.40.50.140. 1 hit.
InterProiIPR000977. DNA_ligase_ATP-dep.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view]
SUPFAMiSSF117018. SSF117018. 1 hit.
SSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR00574. dnl1. 1 hit.
PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
PS00333. DNA_LIGASE_A2. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

B9SCJ7-1 [UniParc]FASTAAdd to Basket

« Hide

MSTPRSAFDV LMKKSAANKK SQSSSPKKRK SPDSQIAPKT LINSTQSLQQ    50
QPPNTIQHKE TPQKPQDSSL SLGEEKKVDT AKKQRLAIAE MKGKIKSLMK 100
NPKDFDPNEV VYWEKGENVP FIFVCSAFEY LEDEKEKGRG NITNVACNML 150
RSVMSTTPDD LLALVYLLAN RVAPAHEGVE LGIGEAMIIK ALAEAFGRTE 200
KQVKKEYEGT GDLGRVAQAS RSSQSMMRRP EPLTVSKVFN TFQLIAKDSG 250
KDSQDKKKNR IKALLVAATD CEPQYLIRLL QGKLRINLAG QTLLAALGQA 300
AVFSENHCTV PSNIQSPLDE AAKIVKQVYS VLPVYDRIVP ALLNDGVWNL 350
PKTCSFTPGV PVGPMLAKPA KSVTEIVEKF QGKFTCEYKY DGERAQIHFL 400
ENGSVEIYSR NAERNTGKYP DVVVAISRSK KSSVKSFVLD CEIVAYNRGE 450
KKILPFQILS TRPRKNVVMS DIKVDVCIYA FDMLYLNGKP LIEEQLEDRR 500
KLLYDSFEED PEHFQFATAI TSNDLEEIQK FLDAAVDASC EGLIIKTLDK 550
DATYEPSKRS NNWVKLKKDY IESIGDSLDL VPIAAYHGRG KRTGVYGAFL 600
LACYNSSTEE FESICKIGTG FSEQVLEERS NSLRAKVVPQ PKSYYRYEEK 650
IKPDVWFEPT EVWEVKAADL TISPVHRAAV GIVNSDKGIS LRFPRLMRVR 700
EDKSPEEATS SDQVADMYNA QKQNQPKVTQ ADSDDDQ 737
Length:737
Mass (Da):82,467
Last modified:March 24, 2009 - v1
Checksum:iD245BEFD7356ECD1
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
EQ973922 Genomic DNA. Translation: EEF38656.1.
RefSeqiXP_002523716.1. XM_002523670.1.

Genome annotation databases

GeneIDi8275235.
KEGGircu:RCOM_0474620.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
EQ973922 Genomic DNA. Translation: EEF38656.1 .
RefSeqi XP_002523716.1. XM_002523670.1.

3D structure databases

ModBasei Search...
MobiDBi Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

GeneIDi 8275235.
KEGGi rcu:RCOM_0474620.

Phylogenomic databases

KOi K10747.

Family and domain databases

Gene3Di 1.10.3260.10. 1 hit.
2.40.50.140. 1 hit.
InterProi IPR000977. DNA_ligase_ATP-dep.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view ]
Pfami PF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view ]
SUPFAMi SSF117018. SSF117018. 1 hit.
SSF50249. SSF50249. 1 hit.
TIGRFAMsi TIGR00574. dnl1. 1 hit.
PROSITEi PS00697. DNA_LIGASE_A1. 1 hit.
PS00333. DNA_LIGASE_A2. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: cv. Hale.

Entry informationi

Entry nameiB9SCJ7_RICCO
AccessioniPrimary (citable) accession number: B9SCJ7
Entry historyi
Integrated into UniProtKB/TrEMBL: March 24, 2009
Last sequence update: March 24, 2009
Last modified: May 14, 2014
This is version 33 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome

External Data

Dasty 3

Similar proteinsi