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B9SCJ7 (B9SCJ7_RICCO) Unreviewed, UniProtKB/TrEMBL

Last modified February 19, 2014. Version 32. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein attributes

Sequence length737 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Catalytic activity

ATP + (deoxyribonucleotide)(n) + (deoxyribonucleotide)(m) = AMP + diphosphate + (deoxyribonucleotide)(n+m). RuleBase RU000617

Sequence similarities

Belongs to the ATP-dependent DNA ligase family.

Sequences

Sequence LengthMass (Da)Tools
B9SCJ7 [UniParc].

Last modified March 24, 2009. Version 1.
Checksum: D245BEFD7356ECD1

FASTA73782,467
        10         20         30         40         50         60 
MSTPRSAFDV LMKKSAANKK SQSSSPKKRK SPDSQIAPKT LINSTQSLQQ QPPNTIQHKE 

        70         80         90        100        110        120 
TPQKPQDSSL SLGEEKKVDT AKKQRLAIAE MKGKIKSLMK NPKDFDPNEV VYWEKGENVP 

       130        140        150        160        170        180 
FIFVCSAFEY LEDEKEKGRG NITNVACNML RSVMSTTPDD LLALVYLLAN RVAPAHEGVE 

       190        200        210        220        230        240 
LGIGEAMIIK ALAEAFGRTE KQVKKEYEGT GDLGRVAQAS RSSQSMMRRP EPLTVSKVFN 

       250        260        270        280        290        300 
TFQLIAKDSG KDSQDKKKNR IKALLVAATD CEPQYLIRLL QGKLRINLAG QTLLAALGQA 

       310        320        330        340        350        360 
AVFSENHCTV PSNIQSPLDE AAKIVKQVYS VLPVYDRIVP ALLNDGVWNL PKTCSFTPGV 

       370        380        390        400        410        420 
PVGPMLAKPA KSVTEIVEKF QGKFTCEYKY DGERAQIHFL ENGSVEIYSR NAERNTGKYP 

       430        440        450        460        470        480 
DVVVAISRSK KSSVKSFVLD CEIVAYNRGE KKILPFQILS TRPRKNVVMS DIKVDVCIYA 

       490        500        510        520        530        540 
FDMLYLNGKP LIEEQLEDRR KLLYDSFEED PEHFQFATAI TSNDLEEIQK FLDAAVDASC 

       550        560        570        580        590        600 
EGLIIKTLDK DATYEPSKRS NNWVKLKKDY IESIGDSLDL VPIAAYHGRG KRTGVYGAFL 

       610        620        630        640        650        660 
LACYNSSTEE FESICKIGTG FSEQVLEERS NSLRAKVVPQ PKSYYRYEEK IKPDVWFEPT 

       670        680        690        700        710        720 
EVWEVKAADL TISPVHRAAV GIVNSDKGIS LRFPRLMRVR EDKSPEEATS SDQVADMYNA 

       730 
QKQNQPKVTQ ADSDDDQ 

« Hide

References

[1]"Draft genome sequence of the oilseed species Ricinus communis."
Chan A.P., Crabtree J., Zhao Q., Lorenzi H., Orvis J., Puiu D., Melake-Berhan A., Jones K.M., Redman J., Chen G., Cahoon E.B., Gedil M., Stanke M., Haas B.J., Wortman J.R., Fraser-Liggett C.M., Ravel J., Rabinowicz P.D.
Nat. Biotechnol. 28:951-956(2010) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: cv. Hale.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
EQ973922 Genomic DNA. Translation: EEF38656.1.
RefSeqXP_002523716.1. XM_002523670.1.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

GeneID8275235.
KEGGrcu:RCOM_0474620.

Phylogenomic databases

KOK10747.
ProtClustDBPLN03113.

Family and domain databases

Gene3D1.10.3260.10. 1 hit.
2.40.50.140. 1 hit.
InterProIPR000977. DNA_ligase_ATP-dep.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view]
SUPFAMSSF117018. SSF117018. 1 hit.
SSF50249. SSF50249. 1 hit.
TIGRFAMsTIGR00574. dnl1. 1 hit.
PROSITEPS00697. DNA_LIGASE_A1. 1 hit.
PS00333. DNA_LIGASE_A2. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameB9SCJ7_RICCO
AccessionPrimary (citable) accession number: B9SCJ7
Entry history
Integrated into UniProtKB/TrEMBL: March 24, 2009
Last sequence update: March 24, 2009
Last modified: February 19, 2014
This is version 32 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)