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B9RDR9 (B9RDR9_RICCO) Unreviewed, UniProtKB/TrEMBL

Last modified February 19, 2014. Version 26. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequences·References·Cross-refs·Entry infoCustomize order

Names and origin

Protein names
EC=3.2.1.2 EMBL EEF50527.1
Gene names
ORF Names:RCOM_1615230 EMBL EEF50527.1
OrganismRicinus communis (Castor bean) [Complete proteome]
Taxonomic identifier3988 [NCBI]
Taxonomic lineageEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsfabidsMalpighialesEuphorbiaceaeAcalyphoideaeAcalypheaeRicinus

Protein attributes

Sequence length609 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Sequence similarities

Belongs to the glycosyl hydrolase 14 family. RuleBase RU004157

Ontologies

Keywords
   Molecular functionGlycosidase EMBL EEF50527.1
Hydrolase
   Technical termComplete proteome
Gene Ontology (GO)
   Biological_processpolysaccharide catabolic process

Inferred from electronic annotation. Source: InterPro

   Molecular_functionbeta-amylase activity

Inferred from electronic annotation. Source: UniProtKB-EC

Complete GO annotation...

Sequences

Sequence LengthMass (Da)Tools
B9RDR9 [UniParc].

Last modified March 24, 2009. Version 1.
Checksum: 92B9C39872126D44

FASTA60969,189
        10         20         30         40         50         60 
MAVSSHQLLH CPSPYYSTAS KAQSFLASIS TFCCSSSEFN SCGFRASMVS FCTRSQNLAV 

        70         80         90        100        110        120 
VRGKKQRTDN DSLIDNSVDS IDDNQVSDIP VEVYERDFTG TAYVPVYVML PLGVINMNCE 

       130        140        150        160        170        180 
LVDPEGLWNG LKILKSANVD GVMIDCWWGI VEGNAPQVYD WSGYKRLFQI VNELKLKLQV 

       190        200        210        220        230        240 
VMSFHECGGN VGDDVHIPLP HWVTEIGQTN PDIYFTDREG RRNTECLTWG IGKERVLKGR 

       250        260        270        280        290        300 
TAVEVYFDYM RSFRVEFDEF FEDGMISEIE VGLGPCGELR YPSYPAKHGW RYPGIGEFQC 

       310        320        330        340        350        360 
YDKYLMRSLS KAAEARGHSF WARGPDNAGF YNSAPHETGF FRDGGDYDSY YGRFFLNWYS 

       370        380        390        400        410        420 
RVLIDHGDRV LALANLAFEG TCISAKVSGI HWWYKTASHA AELTAGFYNP SNRDGYAPIA 

       430        440        450        460        470        480 
AMLNKHGVGL NFTCVEMRTL NQNEDFPEAL ADPEGLVWQV LNAAWDACIP VASENALPCY 

       490        500        510        520        530        540 
DREGYNKILE NAKPLEDPDG RHLSVFTYLR LSAVLMERHN FIEFERFVKR MHGDLSLSPL 

       550        560        570        580        590        600 
LLLGFSLYFL IQLTIRMVCW HAMAYDIKIC RCLEIPVYCS YLVCQLRFHF TLWVHLHDRC 


GCVWVVSGS 

« Hide

References

[1]"Draft genome sequence of the oilseed species Ricinus communis."
Chan A.P., Crabtree J., Zhao Q., Lorenzi H., Orvis J., Puiu D., Melake-Berhan A., Jones K.M., Redman J., Chen G., Cahoon E.B., Gedil M., Stanke M., Haas B.J., Wortman J.R., Fraser-Liggett C.M., Ravel J., Rabinowicz P.D.
Nat. Biotechnol. 28:951-956(2010) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: cv. Hale.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
EQ973775 Genomic DNA. Translation: EEF50527.1.
RefSeqXP_002511858.1. XM_002511812.1.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

GeneID8261877.
KEGGrcu:RCOM_1615230.

Phylogenomic databases

KOK01177.

Family and domain databases

Gene3D3.20.20.80. 1 hit.
InterProIPR001554. Glyco_hydro_14.
IPR018238. Glyco_hydro_14_CS.
IPR001371. Glyco_hydro_14B_pln.
IPR013781. Glyco_hydro_catalytic_dom.
IPR017853. Glycoside_hydrolase_SF.
[Graphical view]
PfamPF01373. Glyco_hydro_14. 1 hit.
[Graphical view]
PRINTSPR00750. BETAAMYLASE.
PR00842. GLHYDLASE14B.
SUPFAMSSF51445. SSF51445. 1 hit.
PROSITEPS00506. BETA_AMYLASE_1. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameB9RDR9_RICCO
AccessionPrimary (citable) accession number: B9RDR9
Entry history
Integrated into UniProtKB/TrEMBL: March 24, 2009
Last sequence update: March 24, 2009
Last modified: February 19, 2014
This is version 26 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)