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B9RAW2

- B9RAW2_RICCO

UniProt

B9RAW2 - B9RAW2_RICCO

Protein

Histone deacetylase

Gene

RCOM_1509350

Organism
Ricinus communis (Castor bean)
Status
Unreviewed - Annotation score: 2 out of 5- Protein inferred from homologyi
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    • History
      Entry version 30 (01 Oct 2014)
      Sequence version 1 (24 Mar 2009)
      Previous versions | rss
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    Functioni

    Catalytic activityi

    Hydrolysis of an N(6)-acetyl-lysine residue of a histone to yield a deacetylated histone.UniRule annotation

    GO - Molecular functioni

    1. NAD-dependent histone deacetylase activity (H3-K14 specific) Source: UniProtKB-EC
    2. NAD-dependent histone deacetylase activity (H3-K18 specific) Source: UniProtKB-EC
    3. NAD-dependent histone deacetylase activity (H3-K9 specific) Source: UniProtKB-EC
    4. NAD-dependent histone deacetylase activity (H4-K16 specific) Source: UniProtKB-EC

    GO - Biological processi

    1. regulation of transcription, DNA-templated Source: UniProtKB-KW
    2. transcription, DNA-templated Source: UniProtKB-KW

    Keywords - Molecular functioni

    Chromatin regulatorUniRule annotation, HydrolaseUniRule annotationSAAS annotation

    Keywords - Biological processi

    Transcription, Transcription regulationUniRule annotation

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    Histone deacetylaseUniRule annotation (EC:3.5.1.98UniRule annotation)
    Gene namesi
    ORF Names:RCOM_1509350Imported
    OrganismiRicinus communis (Castor bean)Imported
    Taxonomic identifieri3988 [NCBI]
    Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsfabidsMalpighialesEuphorbiaceaeAcalyphoideaeAcalypheaeRicinus
    ProteomesiUP000008311: Unassembled WGS sequence

    Subcellular locationi

    Nucleus UniRule annotation

    GO - Cellular componenti

    1. nucleus Source: UniProtKB-SubCell

    Keywords - Cellular componenti

    NucleusUniRule annotation

    Structurei

    3D structure databases

    ProteinModelPortaliB9RAW2.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the histone deacetylase family. HD Type 1 subfamily.UniRule annotation

    Phylogenomic databases

    KOiK06067.

    Family and domain databases

    Gene3Di3.40.800.20. 1 hit.
    InterProiIPR000286. His_deacetylse.
    IPR003084. His_deacetylse_1.
    IPR023801. His_deacetylse_dom.
    [Graphical view]
    PANTHERiPTHR10625. PTHR10625. 1 hit.
    PfamiPF00850. Hist_deacetyl. 1 hit.
    [Graphical view]
    PIRSFiPIRSF037913. His_deacetylse_1. 1 hit.
    PRINTSiPR01270. HDASUPER.
    PR01271. HISDACETLASE.

    Sequencei

    Sequence statusi: Complete.

    B9RAW2-1 [UniParc]FASTAAdd to Basket

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    MGDETGGASL PSTGTDAKKR RVTYFYEPTI GNYYYGQGHP MKPHRIRMAH    50
    NLIVHYSLHR RMEINRPFPA STIDIRKFHS DDYVDFLSSV SPESLADPAH 100
    NRHLKRFNVG EDCPVFDGLF GFCQASAGGS MGAAVKLNRG DADIALNWAG 150
    GLHHAKKSEA SGFCYVNDIV LGILELLKVH RRVLYVDIDV HHGDGVEEAF 200
    YTTDRVMTVS FHKFGDFFPG TGHIKDTGAG QGKNYALNIP LNDGMDDVSF 250
    RALFRPIIQK VMEVYQPDAV VLQCGADSLT GDRLGCFNLS VKGHADCLRF 300
    LRSFNVPLMV LGGGGYTIRN VARCWCYETA VAVGVEPDNK LPYNEYYEYF 350
    GPDYTLHIDP SNMENLNSPK DMERIRNILL EQLSKLPNAP SVPFQTTPAI 400
    TEVPEEGDEE MDRRPKRRIW DGEGYESPDE DEKPQPRRLN SDGLVAKDEM 450
    RDHIDEMEED KKDVHPQC 468
    Length:468
    Mass (Da):52,640
    Last modified:March 24, 2009 - v1
    Checksum:i023FBF7ABA30135A
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    EQ973773 Genomic DNA. Translation: EEF51939.1.
    RefSeqiXP_002511337.1. XM_002511291.1.

    Genome annotation databases

    GeneIDi8278303.
    KEGGircu:RCOM_1509350.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    EQ973773 Genomic DNA. Translation: EEF51939.1 .
    RefSeqi XP_002511337.1. XM_002511291.1.

    3D structure databases

    ProteinModelPortali B9RAW2.
    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    GeneIDi 8278303.
    KEGGi rcu:RCOM_1509350.

    Phylogenomic databases

    KOi K06067.

    Family and domain databases

    Gene3Di 3.40.800.20. 1 hit.
    InterProi IPR000286. His_deacetylse.
    IPR003084. His_deacetylse_1.
    IPR023801. His_deacetylse_dom.
    [Graphical view ]
    PANTHERi PTHR10625. PTHR10625. 1 hit.
    Pfami PF00850. Hist_deacetyl. 1 hit.
    [Graphical view ]
    PIRSFi PIRSF037913. His_deacetylse_1. 1 hit.
    PRINTSi PR01270. HDASUPER.
    PR01271. HISDACETLASE.
    ProtoNeti Search...

    Publicationsi

    1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: cv. HaleImported.

    Entry informationi

    Entry nameiB9RAW2_RICCO
    AccessioniPrimary (citable) accession number: B9RAW2
    Entry historyi
    Integrated into UniProtKB/TrEMBL: March 24, 2009
    Last sequence update: March 24, 2009
    Last modified: October 1, 2014
    This is version 30 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3