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B9RAW2 (B9RAW2_RICCO) Unreviewed, UniProtKB/TrEMBL

Last modified March 6, 2013. Version 24. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesRecommended name:
Histone deacetylase PIRNR PIRNR037913
EC=3.5.1.98 PIRNR PIRNR037913
Gene names
ORF Names:RCOM_1509350 EMBL EEF51939.1
OrganismRicinus communis (Castor bean) [Complete proteome]
Taxonomic identifier3988 [NCBI]
Taxonomic lineageEukaryota › Viridiplantae › Streptophyta › Embryophyta › Tracheophyta › Spermatophyta › Magnoliophyta › eudicotyledons › core eudicotyledons › rosids › fabids › Malpighiales › Euphorbiaceae › Acalyphoideae › Acalypheae › Ricinus

Protein attributes

Sequence length468 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Catalytic activity

Hydrolysis of an N(6)-acetyl-lysine residue of a histone to yield a deacetylated histone. PIRNR PIRNR037913

Subcellular location

Nucleus By similarity PIRNR PIRNR037913.

Sequence similarities

Belongs to the histone deacetylase family. HD Type 1 subfamily. PIRNR PIRNR037913

Sequences

Sequence LengthMass (Da)Tools
B9RAW2 [UniParc].

Last modified March 24, 2009. Version 1.
Checksum: 023FBF7ABA30135A

FASTA46852,640
        10         20         30         40         50         60 
MGDETGGASL PSTGTDAKKR RVTYFYEPTI GNYYYGQGHP MKPHRIRMAH NLIVHYSLHR 

        70         80         90        100        110        120 
RMEINRPFPA STIDIRKFHS DDYVDFLSSV SPESLADPAH NRHLKRFNVG EDCPVFDGLF 

       130        140        150        160        170        180 
GFCQASAGGS MGAAVKLNRG DADIALNWAG GLHHAKKSEA SGFCYVNDIV LGILELLKVH 

       190        200        210        220        230        240 
RRVLYVDIDV HHGDGVEEAF YTTDRVMTVS FHKFGDFFPG TGHIKDTGAG QGKNYALNIP 

       250        260        270        280        290        300 
LNDGMDDVSF RALFRPIIQK VMEVYQPDAV VLQCGADSLT GDRLGCFNLS VKGHADCLRF 

       310        320        330        340        350        360 
LRSFNVPLMV LGGGGYTIRN VARCWCYETA VAVGVEPDNK LPYNEYYEYF GPDYTLHIDP 

       370        380        390        400        410        420 
SNMENLNSPK DMERIRNILL EQLSKLPNAP SVPFQTTPAI TEVPEEGDEE MDRRPKRRIW 

       430        440        450        460 
DGEGYESPDE DEKPQPRRLN SDGLVAKDEM RDHIDEMEED KKDVHPQC

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References

[1]"Draft genome sequence of the oilseed species Ricinus communis."
Chan A.P., Crabtree J., Zhao Q., Lorenzi H., Orvis J., Puiu D., Melake-Berhan A., Jones K.M., Redman J., Chen G., Cahoon E.B., Gedil M., Stanke M., Haas B.J., Wortman J.R., Fraser-Liggett C.M., Ravel J., Rabinowicz P.D.
Nat. Biotechnol. 28:951-956(2010) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: cv. Hale.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		EQ973773 Genomic DNA. Translation: EEF51939.1.
RefSeqXP_002511337.1. XM_002511291.1.

3D structure databases

ModBaseSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

GeneID8278303.
KEGGrcu:RCOM_1509350.

Phylogenomic databases

KOK06067.
ProtClustDBCLSN2687541.

Family and domain databases

Gene3D3.40.800.20. 1 hit.
InterProIPR000286. His_deacetylse.
IPR003084. His_deacetylse_1.
IPR023801. His_deacetylse_dom.
[Graphical view]
PANTHERPTHR10625. PTHR10625. 1 hit.
PfamPF00850. Hist_deacetyl. 1 hit.
[Graphical view]
PIRSFPIRSF037913. His_deacetylse_1. 1 hit.
PRINTSPR01270. HDASUPER.
PR01271. HISDACETLASE.
ProtoNetSearch...

Entry information

Entry nameB9RAW2_RICCO
AccessionPrimary (citable) accession number: B9RAW2
Entry history
Integrated into UniProtKB/TrEMBL: March 24, 2009
Last sequence update: March 24, 2009
Last modified: March 6, 2013
This is version 24 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
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