B9P5N0 (B9P5N0_POPTR) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
SET domain protein EMBL EEE72937.1

Gene names

Name:	SDG950 EMBL EEE72937.1
ORF Names:	POPTRDRAFT_590678 EMBL EEE72937.1

Organism

Populus trichocarpa (Western balsam poplar) (Populus balsamifera subsp. trichocarpa) [Reference proteome]

Taxonomic identifier

3694 [NCBI]

Taxonomic lineage

cellular organisms › Eukaryota › Viridiplantae › Streptophyta › Streptophytina › Embryophyta › Tracheophyta › Euphyllophyta › Spermatophyta › Magnoliophyta › eudicotyledons › core eudicotyledons › rosids › fabids › Malpighiales › Salicaceae › Saliceae › Populus

Protein attributes

Sequence length	669 AA.
Sequence status	Complete.
Protein existence	Evidence at transcript level

General annotation (Comments)

Catalytic activity	S-adenosyl-L-methionine + L-lysine-[histone] = S-adenosyl-L-homocysteine + N(6)-methyl-L-lysine-[histone]. SAAS SAAS007728 S-adenosyl-L-methionine + histone L-lysine = S-adenosyl-L-homocysteine + histone N(6)-methyl-L-lysine.
Subcellular location	Nucleus By similarity.
Sequence similarities	Contains 1 SET domain. SAAS SAAS007728 RuleBase RU004538 Contains 1 post-SET domain. RuleBase RU004541 Contains 1 pre-SET domain. SAAS SAAS007728

Ontologies

Keywords
Cellular component	Chromosome SAAS SAAS007728 Nucleus SAAS SAAS007728 RuleBase RU004542
Molecular function	Methyltransferase SAAS SAAS007728 RuleBase RU004541 Transferase
Technical term	Complete proteome Reference proteome
Gene Ontology (GO)
Cellular_component	chromosome Inferred from electronic annotation. Source: UniProtKB-KW nucleus Inferred from electronic annotation. Source: UniProtKB-SubCell
Molecular_function	histone-lysine N-methyltransferase activity Inferred from electronic annotation. Source: InterPro zinc ion binding Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	B9P5N0 [UniParc]. Last modified March 24, 2009. Version 1. Checksum: B799CAC1483BB227	FASTA	669	73,893
	10 20 30 40 50 60 MVMEGGGSGN NSTPIIDKTR VLDVEPLRTL VPVFPSSSKA PPFGPYSSGF APFYPFSAPQ 70 80 90 100 110 120 GSQATPDLNQ QTHTTPAAPL RSFRATESNG DAFDGEYESY DGSTGSAKRR PKSSSQKRAR 130 140 150 160 170 180 KIQDLDFTLS VDENNFVVGV SLSERDDGNR EVVHSIQMRF DALRRRLSQL EDAKESPAGI 190 200 210 220 230 240 IRRADLKAGN ILMTKQVRTN MRKRIGTVPG VEIGDIFFFR MEMCLLGLHA PSMAGIDYMS 250 260 270 280 290 300 VRNDLEEEPL AVSIVSSGYY DDDAEDKDVL IYSGQGGAAN KDKGATDQKL ERGNLALERS 310 320 330 340 350 360 LRRGNEVRVI RGMKDSVNQA SKVYVYDGLF RIQESWVEKA KSGCNIFKYK LVRIPGQPDA 370 380 390 400 410 420 FGVWKSIEKW REGLSSRAGL ILPDLTSGAE SVPVALVNDV DEEKGPAYFT YVSTVKYSKS 430 440 450 460 470 480 FKLTQPAYGC NCRNACQPGN LNCSCIRKNE GNFPYTANGV LVCRAPMIHE CGPTCPCFPN 490 500 510 520 530 540 CKNRASQTGL KARLEVFKTK DRGWGLRSWD SFRAGTFICE YAGEVIEKVS QVGEGEGDGY 550 560 570 580 590 600 VFDTSHVYES FKWNYEPGLV EEDGSIEAIE EPNVPSPLVI SSKNVGNVAR FMNHSCYPNV 610 620 630 640 650 660 FWQPIMYENN NESFIHIAFF AMRHIPPMTE LTFDYGKSCS GEAAADGGST SRGRRKCLCG APICRGYFG

References

	« Hide 'large scale' referencesShow 'large scale' references »
[1]	"The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)." Tuskan G.A., Difazio S., Jansson S., Bohlmann J., Grigoriev I., Hellsten U., Putnam N., Ralph S., Rombauts S., Salamov A., Schein J., Sterck L., Aerts A., Bhalerao R.R., Bhalerao R.P., Blaudez D., Boerjan W., Brun A. , Brunner A., Busov V., Campbell M., Carlson J., Chalot M., Chapman J., Chen G.-L., Cooper D., Coutinho P.M., Couturier J., Covert S., Cronk Q., Cunningham R., Davis J., Degroeve S., Dejardin A., dePamphilis C.W., Detter J., Dirks B., Dubchak I., Duplessis S., Ehlting J., Ellis B., Gendler K., Goodstein D., Gribskov M., Grimwood J., Groover A., Gunter L., Hamberger B., Heinze B., Helariutta Y., Henrissat B., Holligan D., Holt R., Huang W., Islam-Faridi N., Jones S., Jones-Rhoades M., Jorgensen R., Joshi C., Kangasjaervi J., Karlsson J., Kelleher C., Kirkpatrick R., Kirst M., Kohler A., Kalluri U., Larimer F., Leebens-Mack J., Leple J.-C., Locascio P., Lou Y., Lucas S., Martin F., Montanini B., Napoli C., Nelson D.R., Nelson C., Nieminen K., Nilsson O., Pereda V., Peter G., Philippe R., Pilate G., Poliakov A., Razumovskaya J., Richardson P., Rinaldi C., Ritland K., Rouze P., Ryaboy D., Schmutz J., Schrader J., Segerman B., Shin H., Siddiqui A., Sterky F., Terry A., Tsai C.-J., Uberbacher E., Unneberg P., Vahala J., Wall K., Wessler S., Yang G., Yin T., Douglas C., Marra M., Sandberg G., Van de Peer Y., Rokhsar D.S. Science 313:1596-1604(2006) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: cv. Nisqually.
[2]	US DOE Joint Genome Institute (JGI-PGF) Grigoriev I.V., Terry A., Salamov A.A., Otillar R., Lou Y., Lucas S., Hammon N., Glavina del Rio T., Detter J., Kalin E., Tice H., Pitluck S., Chapman J., Putnam N.H., Brunner A., Busov V., Campbell M., Chalot M. , Covert S., Davis J., DiFazio S., Gribskov M., Gunter L., Hamberger B., Jansson S., Joshi C., Larimer F., Martin F., Napoli C., Nelson D., Ralph S., Rombauts S., Rouze P., Schrader J., Tsai C., Vahala J., Tuskan G., Rokhsar D. Submitted (DEC-2008) to the EMBL/GenBank/DDBJ databases Cited for: GENOME REANNOTATION. Strain: cv. Nisqually.

Cross-references

Sequence databases
EMBL GenBank DDBJ	EQ133904 Genomic DNA. Translation: EEE72937.1.
RefSeq	XP_002336307.1. XM_002336268.1.
3D structure databases
ModBase	Search...
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
GeneID	7493155.
KEGG	pop:POPTR_590678.
Phylogenomic databases
HOGENOM	HOG000238382.
KO	K11420.
ProtClustDB	CLSN2715323.
Gene expression databases
ArrayExpress	B9P5N0.
Family and domain databases
Gene3D	2.30.280.10. 1 hit.
InterPro	IPR025794. Hist-Lys_N-MeTrfase_plant. IPR003616. Post-SET_dom. IPR007728. Pre-SET_dom. IPR003606. Pre-SET_Zn-bd_sub. IPR001214. SET_dom. IPR003105. SRA_YDG. [Graphical view]
Pfam	PF05033. Pre-SET. 1 hit. PF00856. SET. 1 hit. PF02182. YDG_SRA. 1 hit. [Graphical view]
SMART	SM00508. PostSET. 1 hit. SM00468. PreSET. 1 hit. SM00317. SET. 1 hit. SM00466. SRA. 1 hit. [Graphical view]
PROSITE	PS50868. POST_SET. 1 hit. PS50867. PRE_SET. 1 hit. PS51575. SAM_MT43_SUVAR39_2. 1 hit. PS50280. SET. 1 hit. PS51015. YDG. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

B9P5N0_POPTR

Accession

Primary (citable) accession number: B9P5N0

Entry history

Integrated into UniProtKB/TrEMBL:	March 24, 2009
Last sequence update:	March 24, 2009
Last modified:	April 3, 2013
This is version 34 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)