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B9NCS0 (B9NCS0_POPTR) Unreviewed, UniProtKB/TrEMBL

Last modified December 14, 2011. Version 11. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesSubmitted name:
Predicted protein EMBL EEE73057.1
Gene names
ORF Names:POPTRDRAFT_677212 EMBL EEE73057.1
OrganismPopulus trichocarpa (Western balsam poplar) (Populus balsamifera subsp. trichocarpa) [Complete proteome]
Taxonomic identifier3694 [NCBI]
Taxonomic lineageEukaryota › Viridiplantae › Streptophyta › Embryophyta › Tracheophyta › Spermatophyta › Magnoliophyta › eudicotyledons › core eudicotyledons › rosids › fabids › Malpighiales › Salicaceae › Saliceae › Populus

Protein attributes

Sequence length474 AA.
Sequence statusComplete.
Protein existencePredicted

Ontologies

Keywords
   Technical termComplete proteome
Gene Ontology (GO)
   Biological processcarbohydrate utilization

Inferred from electronic annotation. Source: InterPro

   Molecular functionlevansucrase activity

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequences

Sequence LengthMass (Da)Tools
B9NCS0 [UniParc].

Last modified March 24, 2009. Version 1.
Checksum: 068A36CB06A3010F

FASTA47453,118
        10         20         30         40         50         60 
MNMNIKKIVK QATVLTFTTA LLAGGATQAF AKENNQKAYK ETYGVSHITR HDMLQIPKQQ 

        70         80         90        100        110        120 
QNEKYQVPQF DQSTIKNIES AKGLDVWDSW PLQNADGTVA EYNGYHVVFA LAGSPKDADD 

       130        140        150        160        170        180 
TSIYMFYQKV GDNSIDSWKN AGRVFKDSDK FDANDPILKD QTQEWSGSAT FTSDGKIRLF 

       190        200        210        220        230        240 
YTDYSGKHYG KQSLTTAQVN VSKSDDTLKI NGVEDHKTIF DGDGKTYQNV QQFIDEGNYT 

       250        260        270        280        290        300 
SGDNHTLRDP HYVEDKGHKY LVFEANTGTE NGYQGEESLF NKAYYGGGTN FFRKESQKLQ 

       310        320        330        340        350        360 
QSAKKRDAEL ANGALGIIEL NNDYTLKKVM KPLITSNTVT DEIERANVFK MNGKWYLFTD 

       370        380        390        400        410        420 
SRGSKMTIDG INSNDIYMLG YVSNSLTGPY KPLNKTGLVL QMGLDPNDVT FTYSHFAVPQ 

       430        440        450        460        470 
AKGNNVVITS YMTNRGFFED KKATFAPSFL MNIKGNKTSV VKNSILEQGQ LTVN

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References

[1]"The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)."
Tuskan G.A., Difazio S., Jansson S., Bohlmann J., Grigoriev I., Hellsten U., Putnam N., Ralph S., Rombauts S., Salamov A., Schein J., Sterck L., Aerts A., Bhalerao R.R., Bhalerao R.P., Blaudez D., Boerjan W., Brun A. expand/collapse author list , Brunner A., Busov V., Campbell M., Carlson J., Chalot M., Chapman J., Chen G.-L., Cooper D., Coutinho P.M., Couturier J., Covert S., Cronk Q., Cunningham R., Davis J., Degroeve S., Dejardin A., dePamphilis C.W., Detter J., Dirks B., Dubchak I., Duplessis S., Ehlting J., Ellis B., Gendler K., Goodstein D., Gribskov M., Grimwood J., Groover A., Gunter L., Hamberger B., Heinze B., Helariutta Y., Henrissat B., Holligan D., Holt R., Huang W., Islam-Faridi N., Jones S., Jones-Rhoades M., Jorgensen R., Joshi C., Kangasjaervi J., Karlsson J., Kelleher C., Kirkpatrick R., Kirst M., Kohler A., Kalluri U., Larimer F., Leebens-Mack J., Leple J.-C., Locascio P., Lou Y., Lucas S., Martin F., Montanini B., Napoli C., Nelson D.R., Nelson C., Nieminen K., Nilsson O., Pereda V., Peter G., Philippe R., Pilate G., Poliakov A., Razumovskaya J., Richardson P., Rinaldi C., Ritland K., Rouze P., Ryaboy D., Schmutz J., Schrader J., Segerman B., Shin H., Siddiqui A., Sterky F., Terry A., Tsai C.-J., Uberbacher E., Unneberg P., Vahala J., Wall K., Wessler S., Yang G., Yin T., Douglas C., Marra M., Sandberg G., Van de Peer Y., Rokhsar D.S.
Science 313:1596-1604(2006) [PubMed: 16973872] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: cv. Nisqually.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		DS017550 Genomic DNA. Translation: EEE73057.1.

3D structure databases

ModBaseSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Phylogenomic databases

OMATYSHFAV.

Family and domain databases

InterProIPR023296. Glyco_hydro_43_beta-prop.
IPR003469. Glyco_hydro_68.
[Graphical view]
Gene3DG3DSA:2.115.10.20. Glyco_hydro_43_beta-prop. 2 hits.
PfamPF02435. Glyco_hydro_68. 1 hit.
[Graphical view]
SUPFAMSSF75005. Glyco_hydro_43_beta-prop. 1 hit.
ProtoNetSearch...

Entry information

Entry nameB9NCS0_POPTR
AccessionPrimary (citable) accession number: B9NCS0
Entry history
Integrated into UniProtKB/TrEMBL: March 24, 2009
Last sequence update: March 24, 2009
Last modified: December 14, 2011
This is version 11 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
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