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B9N3Y2 (B9N3Y2_POPTR) Unreviewed, UniProtKB/TrEMBL

Last modified December 14, 2011. Version 18. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesSubmitted name:
Predicted protein EMBL EEF09128.1
Gene names
ORF Names:POPTRDRAFT_582363 EMBL EEF09128.1
OrganismPopulus trichocarpa (Western balsam poplar) (Populus balsamifera subsp. trichocarpa) [Complete proteome]
Taxonomic identifier3694 [NCBI]
Taxonomic lineageEukaryota › Viridiplantae › Streptophyta › Embryophyta › Tracheophyta › Spermatophyta › Magnoliophyta › eudicotyledons › core eudicotyledons › rosids › fabids › Malpighiales › Salicaceae › Saliceae › Populus

Protein attributes

Sequence length432 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Sequence similarities

Belongs to the glycosyl hydrolase 17 family. RuleBase RU004335

Ontologies

Keywords
   Molecular functionHydrolase SAAS SAAS000490
   Technical termComplete proteome
Gene Ontology (GO)
   Biological processcarbohydrate metabolic process

Inferred from electronic annotation. Source: InterPro

   Molecular functioncation binding

Inferred from electronic annotation. Source: InterPro

hydrolase activity, hydrolyzing O-glycosyl compounds

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequences

Sequence LengthMass (Da)Tools
B9N3Y2 [UniParc].

Last modified March 24, 2009. Version 1.
Checksum: 21AB5610BC4DCA9D

FASTA43246,542
        10         20         30         40         50         60 
MVVFPYTVAF LLLSSLQTVK IANSQSFIGI NYGQVADNLP PPPSTAKLLQ STSIQKVRLY 

        70         80         90        100        110        120 
GSDPAIIKAL ANTGIGIVIG TANGDIPGLA SDPNFAKSWI NTNVLPFYPA SNIILITVGN 

       130        140        150        160        170        180 
EVMTSNDQNL VNRLLPAMQN VQNALNDASL GGKIKVSTVH SMGVLKQSEP PSSGSFDPSY 

       190        200        210        220        230        240 
GDLMKGLLEF NSANGSPFAI NPYPYYAYRS DTRPETLAFC LFQPNAGRTD GNTKIKYMNM 

       250        260        270        280        290        300 
FDAQVDAVFS ALNSMGFKNV EIVVAETGWP FKGDDNDVGP SIENAKAYNG NLIAHLRSMV 

       310        320        330        340        350        360 
GTPLMPGKSV DTYLFALYDE DLKPGPGSER SFGLFKTDLT MVYDVGLSTS SQIKSLAAAS 

       370        380        390        400        410        420 
QPLIAATTNT INNNNSMSMN TSTCNCMCNC TSTINISSGS NKVYLIIIFN LDFLYGFMGL 

       430 
SLICLFFYDL QT

« Hide

References

[1]"The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)."
Tuskan G.A., Difazio S., Jansson S., Bohlmann J., Grigoriev I., Hellsten U., Putnam N., Ralph S., Rombauts S., Salamov A., Schein J., Sterck L., Aerts A., Bhalerao R.R., Bhalerao R.P., Blaudez D., Boerjan W., Brun A. expand/collapse author list , Brunner A., Busov V., Campbell M., Carlson J., Chalot M., Chapman J., Chen G.-L., Cooper D., Coutinho P.M., Couturier J., Covert S., Cronk Q., Cunningham R., Davis J., Degroeve S., Dejardin A., dePamphilis C.W., Detter J., Dirks B., Dubchak I., Duplessis S., Ehlting J., Ellis B., Gendler K., Goodstein D., Gribskov M., Grimwood J., Groover A., Gunter L., Hamberger B., Heinze B., Helariutta Y., Henrissat B., Holligan D., Holt R., Huang W., Islam-Faridi N., Jones S., Jones-Rhoades M., Jorgensen R., Joshi C., Kangasjaervi J., Karlsson J., Kelleher C., Kirkpatrick R., Kirst M., Kohler A., Kalluri U., Larimer F., Leebens-Mack J., Leple J.-C., Locascio P., Lou Y., Lucas S., Martin F., Montanini B., Napoli C., Nelson D.R., Nelson C., Nieminen K., Nilsson O., Pereda V., Peter G., Philippe R., Pilate G., Poliakov A., Razumovskaya J., Richardson P., Rinaldi C., Ritland K., Rouze P., Ryaboy D., Schmutz J., Schrader J., Segerman B., Shin H., Siddiqui A., Sterky F., Terry A., Tsai C.-J., Uberbacher E., Unneberg P., Vahala J., Wall K., Wessler S., Yang G., Yin T., Douglas C., Marra M., Sandberg G., Van de Peer Y., Rokhsar D.S.
Science 313:1596-1604(2006) [PubMed: 16973872] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: cv. Nisqually.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		DS017293 Genomic DNA. Translation: EEF09128.1.
RefSeqXP_002329975.1. XM_002329939.1.
UniGenePth.13472.

3D structure databases

ModBaseSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsPOPTR_0014s18230.1; POPTR_0014s18230.1; POPTR_0014s18230.
GeneID7455306.
KEGGpop:POPTR_582363.

Phylogenomic databases

GeneTreeEPGT00050000003581.
OMACTSTINI.
PhylomeDBB9N3Y2.

Family and domain databases

InterProIPR000490. Glyco_hydro_17.
IPR013781. Glyco_hydro_subgr_catalytic.
IPR017853. Glycoside_hydrolase_SF.
[Graphical view]
Gene3DG3DSA:3.20.20.80. Glyco_hydro_cat. 1 hit.
PfamPF00332. Glyco_hydro_17. 1 hit.
[Graphical view]
SUPFAMSSF51445. Glyco_hydro_cat. 1 hit.
ProtoNetSearch...

Entry information

Entry nameB9N3Y2_POPTR
AccessionPrimary (citable) accession number: B9N3Y2
Entry history
Integrated into UniProtKB/TrEMBL: March 24, 2009
Last sequence update: March 24, 2009
Last modified: December 14, 2011
This is version 18 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
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