B9MYM2 (B9MYM2_POPTR) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Vitamin-b12 independent methionine synthase, 5-methyltetrahydropteroyltriglutamate-homocysteine EMBL EEE75963.1

Gene names

Name:	MS1 EMBL EEE75963.1
ORF Names:	POPTRDRAFT_679841 EMBL EEE75963.1

Organism

Populus trichocarpa (Western balsam poplar) (Populus balsamifera subsp. trichocarpa) [Complete proteome]

Taxonomic identifier

3694 [NCBI]

Taxonomic lineage

Eukaryota › Viridiplantae › Streptophyta › Embryophyta › Tracheophyta › Spermatophyta › Magnoliophyta › eudicotyledons › core eudicotyledons › rosids › fabids › Malpighiales › Salicaceae › Saliceae › Populus

Protein attributes

Sequence length	765 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

Ontologies

Keywords
Technical term	Complete proteome
Gene Ontology (GO)
Molecular function	5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity Inferred from electronic annotation. Source: InterPro zinc ion binding Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	B9MYM2 [UniParc]. Last modified March 24, 2009. Version 1. Checksum: CD4A0C46E47262A9	FASTA	765	84,598
	10 20 30 40 50 60 MASHIVGYPR MGPKRELKFA LESFWDGKSS AEDLQKVAAD LRSSIWKQMS DAGIKFIPSN 70 80 90 100 110 120 TFSCYDQVLD TTAMLGAVPP RYGWNGGEIG FDVYFSMARG NASVPAMEMT KWFDTNYHYI 130 140 150 160 170 180 VPELGPEVNF SYASHKAVNE YKEAKALGVD TVPVLVGPVS YLLLSKPAKG VEKSFSLLSL 190 200 210 220 230 240 IDKILPVYQE VLAELKAAGA SWIQFDEPKL VMDLGAHELQ AFTHAYSALE ASLSGLNVLV 250 260 270 280 290 300 ETYFADVPVE AYKTLTSLKS VTGFGFDLVR GTKTLELIKG GFPSGKYLFA GVVDGRNIWA 310 320 330 340 350 360 NNLGSSLDTL KALEGIVGKD KLVVSTSCSL LHTAVDLVNE PKLDREIKSW LAFAAQKVVE 370 380 390 400 410 420 VNALAKALAG QQDEAFFSAN AAAQASRKSS PRVTNEAVQK AAVALKGSDH RRATNVSARL 430 440 450 460 470 480 DAQQKKLNLP ILPTTTIGSF PQTMDLRRVR REYKAKKISE QNYVEAIKEE INKVVKIQEE 490 500 510 520 530 540 LDIDVLVHGE PERNDMVEYF GEQLSGFAFT ANGWVQSYGS RCVKPPIIYG DVSRPKAMTV 550 560 570 580 590 600 FWSSMAQSMT KRPMKGMLTG PVTILNWSFV RNDQPRFETC YQIALAIKDE VEDLEKAGIT 610 620 630 640 650 660 VIQIDEAALR EGLPLRKSEH AFYLNWAVHS FRITNCGVED TTQIHTHMCY SNFNDIIHSI 670 680 690 700 710 720 IDMDADVITI ENSRSDEKLL SVFREGVKYG AGIGPGVYDI HSPRIPSEEE IADRIEKMLA 730 740 750 760 VLESNILWVN PDCGLKTRKY AEVKPALSNM VAAAKHLRTK LGSAQ

References

[1]

"The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)." Tuskan G.A., Difazio S., Jansson S., Bohlmann J., Grigoriev I., Hellsten U., Putnam N., Ralph S., Rombauts S., Salamov A., Schein J., Sterck L., Aerts A., Bhalerao R.R., Bhalerao R.P., Blaudez D., Boerjan W., Brun A. , Brunner A., Busov V., Campbell M., Carlson J., Chalot M., Chapman J., Chen G.-L., Cooper D., Coutinho P.M., Couturier J., Covert S., Cronk Q., Cunningham R., Davis J., Degroeve S., Dejardin A., dePamphilis C.W., Detter J., Dirks B., Dubchak I., Duplessis S., Ehlting J., Ellis B., Gendler K., Goodstein D., Gribskov M., Grimwood J., Groover A., Gunter L., Hamberger B., Heinze B., Helariutta Y., Henrissat B., Holligan D., Holt R., Huang W., Islam-Faridi N., Jones S., Jones-Rhoades M., Jorgensen R., Joshi C., Kangasjaervi J., Karlsson J., Kelleher C., Kirkpatrick R., Kirst M., Kohler A., Kalluri U., Larimer F., Leebens-Mack J., Leple J.-C., Locascio P., Lou Y., Lucas S., Martin F., Montanini B., Napoli C., Nelson D.R., Nelson C., Nieminen K., Nilsson O., Pereda V., Peter G., Philippe R., Pilate G., Poliakov A., Razumovskaya J., Richardson P., Rinaldi C., Ritland K., Rouze P., Ryaboy D., Schmutz J., Schrader J., Segerman B., Shin H., Siddiqui A., Sterky F., Terry A., Tsai C.-J., Uberbacher E., Unneberg P., Vahala J., Wall K., Wessler S., Yang G., Yin T., Douglas C., Marra M., Sandberg G., Van de Peer Y., Rokhsar D.S. Science 313:1596-1604(2006) [PubMed: 16973872] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: cv. Nisqually.

Cross-references

Sequence databases
EMBL GenBank DDBJ	DS017274 Genomic DNA. Translation: EEE75963.1.
RefSeq	XP_002328083.1. XM_002328047.1.
UniGene	Pth.3965.
3D structure databases
ProteinModelPortal	B9MYM2.
ModBase	Search...
Protein-protein interaction databases
STRING	B9MYM2.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
GeneID	7455569.
KEGG	pop:POPTR_679841.
Phylogenomic databases
GeneTree	EPGT00050000016428.
OMA	NIWANDF.
ProtClustDB	PLN02475.
Family and domain databases
HAMAP	MF_00172. Meth_synth. [Tree]
InterPro	IPR013215. Cbl-indep_Met_Synth_N. IPR006276. Cobalamin-indep_Met_synthase. IPR002629. Methionine_synth. [Graphical view]
KO	K00549.
Pfam	PF08267. Meth_synt_1. 1 hit. PF01717. Meth_synt_2. 1 hit. [Graphical view]
PIRSF	PIRSF000382. MeTrfase_B12_ind. 1 hit.
TIGRFAMs	TIGR01371. Met_syn_B12ind. 1 hit.
ProtoNet	Search...

Entry information

Entry name

B9MYM2_POPTR

Accession

Primary (citable) accession number: B9MYM2

Entry history

Integrated into UniProtKB/TrEMBL:	March 24, 2009
Last sequence update:	March 24, 2009
Last modified:	December 14, 2011
This is version 22 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)