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B9MT78 (B9MT78_POPTR) Unreviewed, UniProtKB/TrEMBL

Last modified December 14, 2011. Version 20. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesSubmitted name:
AP2 domain-containing transcription factor EMBL EEE71834.1
Gene names
Name:RAP6 EMBL EEE71834.1
ORF Names:POPTRDRAFT_781029 EMBL EEE71834.1
OrganismPopulus trichocarpa (Western balsam poplar) (Populus balsamifera subsp. trichocarpa) [Complete proteome]
Taxonomic identifier3694 [NCBI]
Taxonomic lineageEukaryota › Viridiplantae › Streptophyta › Embryophyta › Tracheophyta › Spermatophyta › Magnoliophyta › eudicotyledons › core eudicotyledons › rosids › fabids › Malpighiales › Salicaceae › Saliceae › Populus

Protein attributes

Sequence length496 AA.
Sequence statusComplete.
Protein existencePredicted

Ontologies

Keywords
   Biological processTranscription
Transcription regulation SAAS SAAS016177
   Cellular componentNucleus SAAS SAAS016177
   LigandDNA-binding SAAS SAAS016177
   Technical termComplete proteome
Gene Ontology (GO)
   Biological processtranscription, DNA-dependent

Inferred from electronic annotation. Source: UniProtKB-KW

   Cellular componentnucleus

Inferred from electronic annotation. Source: UniProtKB-KW

   Molecular functionDNA binding

Inferred from electronic annotation. Source: UniProtKB-KW

sequence-specific DNA binding transcription factor activity

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequences

Sequence LengthMass (Da)Tools
B9MT78 [UniParc].

Last modified March 24, 2009. Version 1.
Checksum: 284B0EC4C277FFCF

FASTA49654,479
        10         20         30         40         50         60 
MMLDLNLSAV SGDSSTTGKN NKHKQKKILE LSNPPLESSG SFDSSSIVNA DGCGDEDSCS 

        70         80         90        100        110        120 
NGDLFAYNFS ILSNEISVKK TVDCDNYNND DGDDSGDRTI QLFPVACGIK NVGGESQSSS 

       130        140        150        160        170        180 
TMQMQWSGVG ECRDQGSPSE NGIVAQQKPV KKSRRGPRSR SSQYRGVTFY RRTGRWESHI 

       190        200        210        220        230        240 
WDCGKQVYLG GFDTAHAAAR VYDRAAIKFR GVDADINFNV TDYDEDIKQM RNFTKEEFVH 

       250        260        270        280        290        300 
ILRRQSTGFS RGSSKYRGVT LHKCGRWEAR MGQFLGKKYI YLGLFDSETE AARAYDKAAI 

       310        320        330        340        350        360 
KCNGREAVTN FEPSTYEGEI LSEPNNGDGN QNLDLNLGIA PPDTSDGLKV NSNMGGFYFQ 

       370        380        390        400        410        420 
SGWDGLSIDR APKILNSASA TMKNQQPNGP GMTSVHPPTW DGVNHHIFPI YEERAIEKRM 

       430        440        450        460        470        480 
EVDSFPNWTR QIQGPYGGGA NPLPLFSTAA SSGFASSAIM APSAAAGQLQ FPSSTILHRF 

       490 
PPFTNPSNIS QFYCRS

« Hide

References

[1]"The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)."
Tuskan G.A., Difazio S., Jansson S., Bohlmann J., Grigoriev I., Hellsten U., Putnam N., Ralph S., Rombauts S., Salamov A., Schein J., Sterck L., Aerts A., Bhalerao R.R., Bhalerao R.P., Blaudez D., Boerjan W., Brun A. expand/collapse author list , Brunner A., Busov V., Campbell M., Carlson J., Chalot M., Chapman J., Chen G.-L., Cooper D., Coutinho P.M., Couturier J., Covert S., Cronk Q., Cunningham R., Davis J., Degroeve S., Dejardin A., dePamphilis C.W., Detter J., Dirks B., Dubchak I., Duplessis S., Ehlting J., Ellis B., Gendler K., Goodstein D., Gribskov M., Grimwood J., Groover A., Gunter L., Hamberger B., Heinze B., Helariutta Y., Henrissat B., Holligan D., Holt R., Huang W., Islam-Faridi N., Jones S., Jones-Rhoades M., Jorgensen R., Joshi C., Kangasjaervi J., Karlsson J., Kelleher C., Kirkpatrick R., Kirst M., Kohler A., Kalluri U., Larimer F., Leebens-Mack J., Leple J.-C., Locascio P., Lou Y., Lucas S., Martin F., Montanini B., Napoli C., Nelson D.R., Nelson C., Nieminen K., Nilsson O., Pereda V., Peter G., Philippe R., Pilate G., Poliakov A., Razumovskaya J., Richardson P., Rinaldi C., Ritland K., Rouze P., Ryaboy D., Schmutz J., Schrader J., Segerman B., Shin H., Siddiqui A., Sterky F., Terry A., Tsai C.-J., Uberbacher E., Unneberg P., Vahala J., Wall K., Wessler S., Yang G., Yin T., Douglas C., Marra M., Sandberg G., Van de Peer Y., Rokhsar D.S.
Science 313:1596-1604(2006) [PubMed: 16973872] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: cv. Nisqually.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		DS017267 Genomic DNA. Translation: EEE71834.1.
RefSeqXP_002326164.1. XM_002326128.1.

3D structure databases

ModBaseSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsPOPTR_0006s13460.1; POPTR_0006s13460.1; POPTR_0006s13460.
GeneID7470150.
KEGGpop:POPTR_781029.

Phylogenomic databases

GeneTreeEPGT00070000028338.
PhylomeDBB9MT78.
ProtClustDBCLSN2714985.

Family and domain databases

InterProIPR016177. DNA-bd_integrase-typ.
IPR001471. TF_ERF_DNA-bd.
[Graphical view]
Gene3DG3DSA:3.30.730.10. TF_ERF. 2 hits.
KOK09284.
PfamPF00847. AP2. 2 hits.
[Graphical view]
PRINTSPR00367. ETHRSPELEMNT.
SMARTSM00380. AP2. 2 hits.
[Graphical view]
SUPFAMSSF54171. DNA-binding_integrase-type. 2 hits.
PROSITEPS51032. AP2_ERF. 2 hits.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameB9MT78_POPTR
AccessionPrimary (citable) accession number: B9MT78
Entry history
Integrated into UniProtKB/TrEMBL: March 24, 2009
Last sequence update: March 24, 2009
Last modified: December 14, 2011
This is version 20 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
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