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Protein

Beta-xylanase

Gene

Athe_0183

Organism
Caldicellulosiruptor bescii (strain ATCC BAA-1888 / DSM 6725 / Z-1320) (Anaerocellum thermophilum)
Status
Unreviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

Catalytic activityi

Endohydrolysis of (1->4)-beta-D-xylosidic linkages in xylans.UniRule annotation

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

GlycosidaseUniRule annotationImported, Hydrolase

Keywords - Biological processi

Carbohydrate metabolism, Polysaccharide degradationUniRule annotation

Enzyme and pathway databases

BioCyciCBES521460:GH8H-185-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Beta-xylanaseUniRule annotation (EC:3.2.1.8UniRule annotation)
Gene namesi
Ordered Locus Names:Athe_0183Imported
OrganismiCaldicellulosiruptor bescii (strain ATCC BAA-1888 / DSM 6725 / Z-1320) (Anaerocellum thermophilum)Imported
Taxonomic identifieri521460 [NCBI]
Taxonomic lineageiBacteriaFirmicutesClostridiaThermoanaerobacteralesThermoanaerobacterales Family III. Incertae SedisCaldicellulosiruptor
Proteomesi
  • UP000007723 Componenti: Chromosome

Subcellular locationi

Topology

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Transmembranei9 – 3123HelicalSequence analysisAdd
BLAST

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Membrane

Interactioni

Protein-protein interaction databases

STRINGi521460.Athe_0183.

Structurei

3D structure databases

ProteinModelPortaliB9MMA3.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini346 – 675330GH10 (glycosyl hydrolase family 10)InterPro annotationAdd
BLAST

Sequence similaritiesi

Belongs to the glycosyl hydrolase 10 (cellulase F) family.UniRule annotation

Keywords - Domaini

Transmembrane, Transmembrane helixSequence analysis

Phylogenomic databases

eggNOGiENOG4105D9F. Bacteria.
COG3693. LUCA.
HOGENOMiHOG000269623.
OMAiIDETQPD.
OrthoDBiEOG6B363F.

Family and domain databases

Gene3Di2.60.120.260. 2 hits.
3.20.20.80. 1 hit.
InterProiIPR003305. CenC_carb-bd.
IPR008979. Galactose-bd-like.
IPR001000. GH10.
IPR031158. GH10_AS.
IPR013781. Glyco_hydro_catalytic_dom.
IPR017853. Glycoside_hydrolase_SF.
[Graphical view]
PfamiPF02018. CBM_4_9. 2 hits.
PF00331. Glyco_hydro_10. 1 hit.
[Graphical view]
PRINTSiPR00134. GLHYDRLASE10.
SMARTiSM00633. Glyco_10. 1 hit.
[Graphical view]
SUPFAMiSSF49785. SSF49785. 2 hits.
SSF51445. SSF51445. 1 hit.
PROSITEiPS00591. GH10_1. 1 hit.
PS51760. GH10_2. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

B9MMA3-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKKRKFKILY LFLIIVLSVS FIISIVFPSF FKAAQTTSTN INFEGRDKLT
60 70 80 90 100
FFAYGKAKIT IDQNIAQEGK KSIKVTDRKS VWDSFGIDVK DVLQRGKTWV
110 120 130 140 150
VSAYVKHKGK KPIEFSITAI YNDGRGLKYL QLGEKIVIPN KWDKIVAKWK
160 170 180 190 200
PTLKNPMDLI IAIHPTVDKT TAYNVDNIQI MTEEVYQSQA VVFKDTFESN
210 220 230 240 250
LTNWQPRGDT VKLKIDNTKS HNGNKSLYVS GRSAFWHGVQ IPVTKYLVAG
260 270 280 290 300
KVYKFSVWLY HQSIDKQGFG LTIQRKMAND EQYKYDWITG SQIEGDGWVE
310 320 330 340 350
ISGNYYVPKD GKIEELVFCV SSWNPTLAFW VDDVTISDPF KLQGPNYNLP
360 370 380 390 400
SLKEKYKEDF KVGVAIGYGE LISDIDTQFI KKHFNSITPG NEMKPESVLK
410 420 430 440 450
GPNNYDFTIA DAFVDFATKN KMGIRGHTLV WHNQTPDWFF KDENGNFLKK
460 470 480 490 500
DELLKRLKNH IYTVVSRYKG KIYAWDVVNE AIDETQPDGY RRSNWYNICG
510 520 530 540 550
PEYIEKAFIW AHEADPQAKL FYNDYNTEIP QKRMFIYNMI KNLKAKGVPI
560 570 580 590 600
HGIGLQCHIN IDNPSVEDIE ETIKLFSTIP GLEIQITELD MSFYQWGSSV
610 620 630 640 650
YYAEPSREML LKQAKKYYEL FNLFKKYKNV IKSVTFWGLK DDNSWLRGVF
660 670 680 690
NKPDFPLLFD EHYDGKPAFW ALIDYSILPQ NANLPTPPAI PKVKAKK
Length:697
Mass (Da):80,604
Last modified:March 24, 2009 - v1
Checksum:i19760CD441A3EB3C
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001393 Genomic DNA. Translation: ACM59335.1.
RefSeqiWP_015906807.1. NC_012034.1.

Genome annotation databases

EnsemblBacteriaiACM59335; ACM59335; Athe_0183.
KEGGiate:Athe_0183.
PATRICi20897326. VBIAnaThe135187_0193.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001393 Genomic DNA. Translation: ACM59335.1.
RefSeqiWP_015906807.1. NC_012034.1.

3D structure databases

ProteinModelPortaliB9MMA3.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi521460.Athe_0183.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiACM59335; ACM59335; Athe_0183.
KEGGiate:Athe_0183.
PATRICi20897326. VBIAnaThe135187_0193.

Phylogenomic databases

eggNOGiENOG4105D9F. Bacteria.
COG3693. LUCA.
HOGENOMiHOG000269623.
OMAiIDETQPD.
OrthoDBiEOG6B363F.

Enzyme and pathway databases

BioCyciCBES521460:GH8H-185-MONOMER.

Family and domain databases

Gene3Di2.60.120.260. 2 hits.
3.20.20.80. 1 hit.
InterProiIPR003305. CenC_carb-bd.
IPR008979. Galactose-bd-like.
IPR001000. GH10.
IPR031158. GH10_AS.
IPR013781. Glyco_hydro_catalytic_dom.
IPR017853. Glycoside_hydrolase_SF.
[Graphical view]
PfamiPF02018. CBM_4_9. 2 hits.
PF00331. Glyco_hydro_10. 1 hit.
[Graphical view]
PRINTSiPR00134. GLHYDRLASE10.
SMARTiSM00633. Glyco_10. 1 hit.
[Graphical view]
SUPFAMiSSF49785. SSF49785. 2 hits.
SSF51445. SSF51445. 1 hit.
PROSITEiPS00591. GH10_1. 1 hit.
PS51760. GH10_2. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "Complete sequence of chromosome of Anaerocellum thermophilum DSM 6725."
    Lucas S., Copeland A., Lapidus A., Glavina del Rio T., Tice H., Bruce D., Goodwin L., Pitluck S., Sims D., Meincke L., Brettin T., Detter J.C., Han C., Larimer F., Land M., Hauser L., Kyrpides N., Ovchinnikova G., Kataeva I., Adams M.W.W.
    Submitted (JAN-2009) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC BAA-1888 / DSM 6725 / Z-1320Imported.

Entry informationi

Entry nameiB9MMA3_CALBD
AccessioniPrimary (citable) accession number: B9MMA3
Entry historyi
Integrated into UniProtKB/TrEMBL: March 24, 2009
Last sequence update: March 24, 2009
Last modified: April 13, 2016
This is version 48 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.