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B9M9Q6

- KDSA_GEODF

UniProt

B9M9Q6 - KDSA_GEODF

Protein

2-dehydro-3-deoxyphosphooctonate aldolase

Gene

kdsA

Organism
Geobacter daltonii (strain DSM 22248 / JCM 15807 / FRC-32)
Status
Reviewed - Annotation score: 2 out of 5- Protein inferred from homologyi
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    • History
      Entry version 35 (01 Oct 2014)
      Sequence version 1 (24 Mar 2009)
      Previous versions | rss
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    Functioni

    Catalytic activityi

    Phosphoenolpyruvate + D-arabinose 5-phosphate + H2O = 2-dehydro-3-deoxy-D-octonate 8-phosphate + phosphate.UniRule annotation

    Pathwayi

    GO - Molecular functioni

    1. 3-deoxy-8-phosphooctulonate synthase activity Source: UniProtKB-HAMAP

    GO - Biological processi

    1. keto-3-deoxy-D-manno-octulosonic acid biosynthetic process Source: UniProtKB-HAMAP

    Keywords - Molecular functioni

    Transferase

    Keywords - Biological processi

    Lipopolysaccharide biosynthesis

    Enzyme and pathway databases

    BioCyciGSP316067:GHSV-2300-MONOMER.
    UniPathwayiUPA00030.
    UPA00357; UER00474.

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    2-dehydro-3-deoxyphosphooctonate aldolaseUniRule annotation (EC:2.5.1.55UniRule annotation)
    Alternative name(s):
    3-deoxy-D-manno-octulosonic acid 8-phosphate synthaseUniRule annotation
    KDO-8-phosphate synthaseUniRule annotation
    Short name:
    KDO 8-P synthaseUniRule annotation
    Short name:
    KDOPSUniRule annotation
    Phospho-2-dehydro-3-deoxyoctonate aldolaseUniRule annotation
    Gene namesi
    Name:kdsAUniRule annotation
    Ordered Locus Names:Geob_2274
    OrganismiGeobacter daltonii (strain DSM 22248 / JCM 15807 / FRC-32)
    Taxonomic identifieri316067 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaDeltaproteobacteriaDesulfuromonadalesGeobacteraceaeGeobacter
    ProteomesiUP000007721: Chromosome

    Subcellular locationi

    Cytoplasm UniRule annotation

    GO - Cellular componenti

    1. cytoplasm Source: UniProtKB-SubCell

    Keywords - Cellular componenti

    Cytoplasm

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Chaini1 – 2722722-dehydro-3-deoxyphosphooctonate aldolasePRO_1000117783Add
    BLAST

    Interactioni

    Protein-protein interaction databases

    STRINGi316067.Geob_2274.

    Structurei

    3D structure databases

    ProteinModelPortaliB9M9Q6.
    SMRiB9M9Q6. Positions 17-272.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the KdsA family.UniRule annotation

    Phylogenomic databases

    eggNOGiCOG2877.
    HOGENOMiHOG000023021.
    KOiK01627.
    OrthoDBiEOG680X4R.

    Family and domain databases

    Gene3Di3.20.20.70. 1 hit.
    HAMAPiMF_00056. KDO8P_synth.
    InterProiIPR013785. Aldolase_TIM.
    IPR006218. DAHP1/KDSA.
    IPR006269. KDO8P_synthase.
    [Graphical view]
    PANTHERiPTHR21057:SF2. PTHR21057:SF2. 1 hit.
    PfamiPF00793. DAHP_synth_1. 1 hit.
    [Graphical view]
    TIGRFAMsiTIGR01362. KDO8P_synth. 1 hit.

    Sequencei

    Sequence statusi: Complete.

    B9M9Q6-1 [UniParc]FASTAAdd to Basket

    « Hide

    MVKEISVGNI KIGGDRPLVL VAGPCVIENE AATLRCAERL MTICNGVSMP    50
    LIFKASYDKA NRTSVNSFRG PGLKDGLKIL KKVKESLGVP VLSDIHSIEQ 100
    VEPAAEVLDV IQIPAFLCRQ TDLVVAAAMS GRVINIKKGQ FLAPWDMENV 150
    VGKAVSTGND NVILTERGVS FGYNNLVSDM RSFPILRQTG YPVIFDATHS 200
    VQLPGGLGGS SGGQREFVEY LGRAAVATGI DGIFMEVHED PEKALCDGPN 250
    SVKLDDLPAL LKKLKAIDAI VK 272
    Length:272
    Mass (Da):29,130
    Last modified:March 24, 2009 - v1
    Checksum:i3F38A1690B40EFFA
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP001390 Genomic DNA. Translation: ACM20628.1.
    RefSeqiYP_002537729.1. NC_011979.1.

    Genome annotation databases

    EnsemblBacteriaiACM20628; ACM20628; Geob_2274.
    GeneIDi7364499.
    KEGGigeo:Geob_2274.
    PATRICi22011171. VBIGeoSp137169_2348.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP001390 Genomic DNA. Translation: ACM20628.1 .
    RefSeqi YP_002537729.1. NC_011979.1.

    3D structure databases

    ProteinModelPortali B9M9Q6.
    SMRi B9M9Q6. Positions 17-272.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 316067.Geob_2274.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai ACM20628 ; ACM20628 ; Geob_2274 .
    GeneIDi 7364499.
    KEGGi geo:Geob_2274.
    PATRICi 22011171. VBIGeoSp137169_2348.

    Phylogenomic databases

    eggNOGi COG2877.
    HOGENOMi HOG000023021.
    KOi K01627.
    OrthoDBi EOG680X4R.

    Enzyme and pathway databases

    UniPathwayi UPA00030 .
    UPA00357 ; UER00474 .
    BioCyci GSP316067:GHSV-2300-MONOMER.

    Family and domain databases

    Gene3Di 3.20.20.70. 1 hit.
    HAMAPi MF_00056. KDO8P_synth.
    InterProi IPR013785. Aldolase_TIM.
    IPR006218. DAHP1/KDSA.
    IPR006269. KDO8P_synthase.
    [Graphical view ]
    PANTHERi PTHR21057:SF2. PTHR21057:SF2. 1 hit.
    Pfami PF00793. DAHP_synth_1. 1 hit.
    [Graphical view ]
    TIGRFAMsi TIGR01362. KDO8P_synth. 1 hit.
    ProtoNeti Search...

    Publicationsi

    1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: DSM 22248 / JCM 15807 / FRC-32.

    Entry informationi

    Entry nameiKDSA_GEODF
    AccessioniPrimary (citable) accession number: B9M9Q6
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: July 28, 2009
    Last sequence update: March 24, 2009
    Last modified: October 1, 2014
    This is version 35 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programProkaryotic Protein Annotation Program

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteome

    Documents

    1. PATHWAY comments
      Index of metabolic and biosynthesis pathways
    2. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3