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B9M9Q6

- KDSA_GEODF

UniProt

B9M9Q6 - KDSA_GEODF

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Protein

2-dehydro-3-deoxyphosphooctonate aldolase

Gene
kdsA, Geob_2274
Organism
Geobacter daltonii (strain DSM 22248 / JCM 15807 / FRC-32)
Status
Reviewed - Annotation score: 3 out of 5 - Protein inferred from homologyi

Functioni

Catalytic activityi

Phosphoenolpyruvate + D-arabinose 5-phosphate + H2O = 2-dehydro-3-deoxy-D-octonate 8-phosphate + phosphate.UniRule annotation

Pathwayi

GO - Molecular functioni

  1. 3-deoxy-8-phosphooctulonate synthase activity Source: UniProtKB-HAMAP

GO - Biological processi

  1. keto-3-deoxy-D-manno-octulosonic acid biosynthetic process Source: UniProtKB-HAMAP
Complete GO annotation...

Keywords - Molecular functioni

Transferase

Keywords - Biological processi

Lipopolysaccharide biosynthesis

Enzyme and pathway databases

BioCyciGSP316067:GHSV-2300-MONOMER.
UniPathwayiUPA00030.
UPA00357; UER00474.

Names & Taxonomyi

Protein namesi
Recommended name:
2-dehydro-3-deoxyphosphooctonate aldolase (EC:2.5.1.55)
Alternative name(s):
3-deoxy-D-manno-octulosonic acid 8-phosphate synthase
KDO-8-phosphate synthase
Short name:
KDO 8-P synthase
Short name:
KDOPS
Phospho-2-dehydro-3-deoxyoctonate aldolase
Gene namesi
Name:kdsA
Ordered Locus Names:Geob_2274
OrganismiGeobacter daltonii (strain DSM 22248 / JCM 15807 / FRC-32)
Taxonomic identifieri316067 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaDeltaproteobacteriaDesulfuromonadalesGeobacteraceaeGeobacter
ProteomesiUP000007721: Chromosome

Subcellular locationi

Cytoplasm By similarity UniRule annotation

GO - Cellular componenti

  1. cytoplasm Source: UniProtKB-SubCell
Complete GO annotation...

Keywords - Cellular componenti

Cytoplasm

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 2722722-dehydro-3-deoxyphosphooctonate aldolaseUniRule annotationPRO_1000117783Add
BLAST

Interactioni

Protein-protein interaction databases

STRINGi316067.Geob_2274.

Structurei

3D structure databases

ProteinModelPortaliB9M9Q6.
SMRiB9M9Q6. Positions 17-272.

Family & Domainsi

Sequence similaritiesi

Belongs to the KdsA family.

Phylogenomic databases

eggNOGiCOG2877.
HOGENOMiHOG000023021.
KOiK01627.
OrthoDBiEOG680X4R.

Family and domain databases

Gene3Di3.20.20.70. 1 hit.
HAMAPiMF_00056. KDO8P_synth.
InterProiIPR013785. Aldolase_TIM.
IPR006218. DAHP1/KDSA.
IPR006269. KDO8P_synthase.
[Graphical view]
PANTHERiPTHR21057:SF2. PTHR21057:SF2. 1 hit.
PfamiPF00793. DAHP_synth_1. 1 hit.
[Graphical view]
TIGRFAMsiTIGR01362. KDO8P_synth. 1 hit.

Sequencei

Sequence statusi: Complete.

B9M9Q6-1 [UniParc]FASTAAdd to Basket

« Hide

MVKEISVGNI KIGGDRPLVL VAGPCVIENE AATLRCAERL MTICNGVSMP    50
LIFKASYDKA NRTSVNSFRG PGLKDGLKIL KKVKESLGVP VLSDIHSIEQ 100
VEPAAEVLDV IQIPAFLCRQ TDLVVAAAMS GRVINIKKGQ FLAPWDMENV 150
VGKAVSTGND NVILTERGVS FGYNNLVSDM RSFPILRQTG YPVIFDATHS 200
VQLPGGLGGS SGGQREFVEY LGRAAVATGI DGIFMEVHED PEKALCDGPN 250
SVKLDDLPAL LKKLKAIDAI VK 272
Length:272
Mass (Da):29,130
Last modified:March 24, 2009 - v1
Checksum:i3F38A1690B40EFFA
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP001390 Genomic DNA. Translation: ACM20628.1.
RefSeqiYP_002537729.1. NC_011979.1.

Genome annotation databases

EnsemblBacteriaiACM20628; ACM20628; Geob_2274.
GeneIDi7364499.
KEGGigeo:Geob_2274.
PATRICi22011171. VBIGeoSp137169_2348.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP001390 Genomic DNA. Translation: ACM20628.1 .
RefSeqi YP_002537729.1. NC_011979.1.

3D structure databases

ProteinModelPortali B9M9Q6.
SMRi B9M9Q6. Positions 17-272.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 316067.Geob_2274.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai ACM20628 ; ACM20628 ; Geob_2274 .
GeneIDi 7364499.
KEGGi geo:Geob_2274.
PATRICi 22011171. VBIGeoSp137169_2348.

Phylogenomic databases

eggNOGi COG2877.
HOGENOMi HOG000023021.
KOi K01627.
OrthoDBi EOG680X4R.

Enzyme and pathway databases

UniPathwayi UPA00030 .
UPA00357 ; UER00474 .
BioCyci GSP316067:GHSV-2300-MONOMER.

Family and domain databases

Gene3Di 3.20.20.70. 1 hit.
HAMAPi MF_00056. KDO8P_synth.
InterProi IPR013785. Aldolase_TIM.
IPR006218. DAHP1/KDSA.
IPR006269. KDO8P_synthase.
[Graphical view ]
PANTHERi PTHR21057:SF2. PTHR21057:SF2. 1 hit.
Pfami PF00793. DAHP_synth_1. 1 hit.
[Graphical view ]
TIGRFAMsi TIGR01362. KDO8P_synth. 1 hit.
ProtoNeti Search...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: DSM 22248 / JCM 15807 / FRC-32.

Entry informationi

Entry nameiKDSA_GEODF
AccessioniPrimary (citable) accession number: B9M9Q6
Entry historyi
Integrated into UniProtKB/Swiss-Prot: July 28, 2009
Last sequence update: March 24, 2009
Last modified: May 14, 2014
This is version 34 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome

Documents

  1. PATHWAY comments
    Index of metabolic and biosynthesis pathways
  2. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

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