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Protein
Submitted name:

Pyridoxal-5'-phosphate-dependent decarboxylase

Gene

Geob_1151

Organism
Geobacter daltonii (strain DSM 22248 / JCM 15807 / FRC-32)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein inferred from homologyi

Functioni

Cofactori

pyridoxal 5'-phosphateUniRule annotation

GO - Molecular functioni

  1. carboxy-lyase activity Source: InterPro
  2. pyridoxal phosphate binding Source: InterPro

GO - Biological processi

  1. carboxylic acid metabolic process Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LyaseUniRule annotation

Keywords - Ligandi

Pyridoxal phosphateUniRule annotation

Enzyme and pathway databases

BioCyciGSP316067:GHSV-1161-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
Pyridoxal-5'-phosphate-dependent decarboxylaseImported
Gene namesi
Ordered Locus Names:Geob_1151Imported
OrganismiGeobacter daltonii (strain DSM 22248 / JCM 15807 / FRC-32)Imported
Taxonomic identifieri316067 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaDeltaproteobacteriaDesulfuromonadalesGeobacteraceaeGeobacter
ProteomesiUP000007721 Componenti: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi316067.Geob_1151.

Family & Domainsi

Sequence similaritiesi

Belongs to the group II decarboxylase family.UniRule annotation

Phylogenomic databases

eggNOGiCOG0076.
HOGENOMiHOG000282553.
KOiK01580.
OMAiALGAFCS.
OrthoDBiEOG6MSRZP.

Family and domain databases

Gene3Di3.40.640.10. 1 hit.
3.90.1150.10. 1 hit.
InterProiIPR022517. Asp_decarboxylase_pyridox.
IPR002129. PyrdxlP-dep_de-COase.
IPR015424. PyrdxlP-dep_Trfase.
IPR015421. PyrdxlP-dep_Trfase_major_sub1.
IPR015422. PyrdxlP-dep_Trfase_major_sub2.
[Graphical view]
PfamiPF00282. Pyridoxal_deC. 1 hit.
[Graphical view]
SUPFAMiSSF53383. SSF53383. 1 hit.
TIGRFAMsiTIGR03799. NOD_PanD_pyr. 1 hit.

Sequencei

Sequence statusi: Complete.

B9M3A1-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MLKNREAARA NLENLYRIFT VPEAPDSTLG AIDQAIAADV TGFLQTHIVA
60 70 80 90 100
IERDLEAIEA DFASAIIPEE PTYVSEYTEF VKENLVAQSV HTAAPGFVGH
110 120 130 140 150
MTSAIPYFML PLARLMTALN QNLVKVETSK AFTPMERQVL AMLHHLVYRR
160 170 180 190 200
DADFYPAWIH NSQHALGAFC SGGTIANVTA LWVARNRLFA PSADFGGLAQ
210 220 230 240 250
EGLGRALQHR GAEGIAVLVS ERGHYSFGKA ADLLGLGRDN LIKVQTDAHN
260 270 280 290 300
RVDLKLLREE VRRLQDRNIL PLALVGIAGT TETGNVDPLE ALADLAGELG
310 320 330 340 350
CHFHVDAAWG GPTLFSDRFR SLLSGIERAD SVTIDAHKQL YVPMGAGMVV
360 370 380 390 400
FKDPTALSAI EHHANYILRH GSKDLGSHTL EGSRPGMAML VHAGLSIIGR
410 420 430 440 450
KGYELLMDMG IERARTFAAM IRQYPDFELT SEPELNILTY RYCPLNVQKA
460 470 480 490 500
LAAAPAEQRA GINALLDQVC QLLQKHQREA GKTFVSRTRL RVARHDEELT
510 520 530 540 550
VLRVVLANPL TTDEILAAVL AEQCEIVQQP EIQGLLQQVE EICTGLTAKA

ADQSPN
Length:556
Mass (Da):60,908
Last modified:March 24, 2009 - v1
Checksum:i0238BBFE25959B0D
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001390 Genomic DNA. Translation: ACM19511.1.
RefSeqiYP_002536612.1. NC_011979.1.

Genome annotation databases

EnsemblBacteriaiACM19511; ACM19511; Geob_1151.
KEGGigeo:Geob_1151.
PATRICi22008798. VBIGeoSp137169_1176.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001390 Genomic DNA. Translation: ACM19511.1.
RefSeqiYP_002536612.1. NC_011979.1.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi316067.Geob_1151.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiACM19511; ACM19511; Geob_1151.
KEGGigeo:Geob_1151.
PATRICi22008798. VBIGeoSp137169_1176.

Phylogenomic databases

eggNOGiCOG0076.
HOGENOMiHOG000282553.
KOiK01580.
OMAiALGAFCS.
OrthoDBiEOG6MSRZP.

Enzyme and pathway databases

BioCyciGSP316067:GHSV-1161-MONOMER.

Family and domain databases

Gene3Di3.40.640.10. 1 hit.
3.90.1150.10. 1 hit.
InterProiIPR022517. Asp_decarboxylase_pyridox.
IPR002129. PyrdxlP-dep_de-COase.
IPR015424. PyrdxlP-dep_Trfase.
IPR015421. PyrdxlP-dep_Trfase_major_sub1.
IPR015422. PyrdxlP-dep_Trfase_major_sub2.
[Graphical view]
PfamiPF00282. Pyridoxal_deC. 1 hit.
[Graphical view]
SUPFAMiSSF53383. SSF53383. 1 hit.
TIGRFAMsiTIGR03799. NOD_PanD_pyr. 1 hit.
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: DSM 22248 / JCM 15807 / FRC-32Imported.

Entry informationi

Entry nameiB9M3A1_GEODF
AccessioniPrimary (citable) accession number: B9M3A1
Entry historyi
Integrated into UniProtKB/TrEMBL: March 24, 2009
Last sequence update: March 24, 2009
Last modified: April 1, 2015
This is version 41 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.