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B9M3A1 (B9M3A1_GEOSF) Unreviewed, UniProtKB/TrEMBL

Last modified May 1, 2013. Version 32. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesSubmitted name:
Pyridoxal-dependent decarboxylase EMBL ACM19511.1
Gene names
Ordered Locus Names:Geob_1151 EMBL ACM19511.1
OrganismGeobacter sp. (strain FRC-32) [Complete proteome] [HAMAP] EMBL ACM19511.1
Taxonomic identifier316067 [NCBI]
Taxonomic lineageBacteria › Proteobacteria › Deltaproteobacteria › Desulfuromonadales › Geobacteraceae › Geobacter ›

Protein attributes

Sequence length556 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Cofactor

Pyridoxal phosphate By similarity. RuleBase RU000382

Sequence similarities

Belongs to the group II decarboxylase family. RuleBase RU000382

Ontologies

Keywords
   LigandPyridoxal phosphate RuleBase RU000382
   Molecular functionLyase RuleBase RU000382
   Technical termComplete proteome
Gene Ontology (GO)
   Biological_processcarboxylic acid metabolic process

Inferred from electronic annotation. Source: InterPro

   Molecular_functioncarboxy-lyase activity

Inferred from electronic annotation. Source: InterPro

pyridoxal phosphate binding

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequences

Sequence LengthMass (Da)Tools
B9M3A1 [UniParc].

Last modified March 24, 2009. Version 1.
Checksum: 0238BBFE25959B0D

FASTA55660,908
        10         20         30         40         50         60 
MLKNREAARA NLENLYRIFT VPEAPDSTLG AIDQAIAADV TGFLQTHIVA IERDLEAIEA 

        70         80         90        100        110        120 
DFASAIIPEE PTYVSEYTEF VKENLVAQSV HTAAPGFVGH MTSAIPYFML PLARLMTALN 

       130        140        150        160        170        180 
QNLVKVETSK AFTPMERQVL AMLHHLVYRR DADFYPAWIH NSQHALGAFC SGGTIANVTA 

       190        200        210        220        230        240 
LWVARNRLFA PSADFGGLAQ EGLGRALQHR GAEGIAVLVS ERGHYSFGKA ADLLGLGRDN 

       250        260        270        280        290        300 
LIKVQTDAHN RVDLKLLREE VRRLQDRNIL PLALVGIAGT TETGNVDPLE ALADLAGELG 

       310        320        330        340        350        360 
CHFHVDAAWG GPTLFSDRFR SLLSGIERAD SVTIDAHKQL YVPMGAGMVV FKDPTALSAI 

       370        380        390        400        410        420 
EHHANYILRH GSKDLGSHTL EGSRPGMAML VHAGLSIIGR KGYELLMDMG IERARTFAAM 

       430        440        450        460        470        480 
IRQYPDFELT SEPELNILTY RYCPLNVQKA LAAAPAEQRA GINALLDQVC QLLQKHQREA 

       490        500        510        520        530        540 
GKTFVSRTRL RVARHDEELT VLRVVLANPL TTDEILAAVL AEQCEIVQQP EIQGLLQQVE 

       550 
EICTGLTAKA ADQSPN

« Hide

References

[1]"Complete sequence of Geobacter sp. FRC-32."
US DOE Joint Genome Institute
Lucas S., Copeland A., Lapidus A., Glavina del Rio T., Dalin E., Tice H., Bruce D., Goodwin L., Pitluck S., Saunders E., Brettin T., Detter J.C., Han C., Larimer F., Land M., Hauser L., Kyrpides N., Ovchinnikova G., Kostka J., Richardson P.
Submitted (JAN-2009) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: FRC-32 EMBL ACM19511.1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		CP001390 Genomic DNA. Translation: ACM19511.1.
RefSeqYP_002536612.1. NC_011979.1.

3D structure databases

ProteinModelPortalB9M3A1.
ModBaseSearch...

Protein-protein interaction databases

STRING316067.Geob_1151.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaACM19511; ACM19511; Geob_1151.
GeneID7364258.
KEGGgeo:Geob_1151.
PATRIC22008798. VBIGeoSp137169_1176.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG0076.
HOGENOMHOG000282553.
KOK01580.
OMACHFHVDA.
ProtClustDBCLSK874231.

Enzyme and pathway databases

BioCycGSP316067:GHSV-1161-MONOMER.

Family and domain databases

Gene3D3.40.640.10. 1 hit.
3.90.1150.10. 1 hit.
InterProIPR022517. Asp_decarboxylase_pyridox.
IPR002129. PyrdxlP-dep_de-COase.
IPR015424. PyrdxlP-dep_Trfase.
IPR015421. PyrdxlP-dep_Trfase_major_sub1.
IPR015422. PyrdxlP-dep_Trfase_major_sub2.
[Graphical view]
PfamPF00282. Pyridoxal_deC. 1 hit.
[Graphical view]
SUPFAMSSF53383. PyrdxlP-dep_Trfase_major. 1 hit.
TIGRFAMsTIGR03799. NOD_PanD_pyr. 1 hit.
ProtoNetSearch...

Entry information

Entry nameB9M3A1_GEOSF
AccessionPrimary (citable) accession number: B9M3A1
Entry history
Integrated into UniProtKB/TrEMBL: March 24, 2009
Last sequence update: March 24, 2009
Last modified: May 1, 2013
This is version 32 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
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