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Protein

Alpha-amylase

Gene

Chy400_3804

Organism
Chloroflexus aurantiacus (strain ATCC 29364 / DSM 637 / Y-400-fl)
Status
Unreviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

Catalytic activityi

Endohydrolysis of (1->4)-alpha-D-glucosidic linkages in polysaccharides containing three or more (1->4)-alpha-linked D-glucose units.UniRule annotation

GO - Molecular functioni

  1. alpha-amylase activity Source: UniProtKB-EC
  2. cation binding Source: InterPro
  3. starch binding Source: InterPro

GO - Biological processi

  1. carbohydrate metabolic process Source: UniProtKB-KW
Complete GO annotation...

Keywords - Molecular functioni

GlycosidaseUniRule annotationImported, Hydrolase

Keywords - Biological processi

Carbohydrate metabolismUniRule annotation

Enzyme and pathway databases

BioCyciCSP480224:GHIY-3856-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Alpha-amylaseUniRule annotation (EC:3.2.1.1UniRule annotation)
Gene namesi
Ordered Locus Names:Chy400_3804Imported
OrganismiChloroflexus aurantiacus (strain ATCC 29364 / DSM 637 / Y-400-fl)Imported
Taxonomic identifieri480224 [NCBI]
Taxonomic lineageiBacteriaChloroflexiChloroflexiaChloroflexalesChloroflexineaeChloroflexaceaeChloroflexus
ProteomesiUP000007725: Chromosome

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Signal peptidei1 – 3838 PotentialImportedAdd
BLAST
Chaini39 – 597559 PotentialImportedPRO_5000435348Add
BLAST

Interactioni

Protein-protein interaction databases

STRINGi480224.Chy400_3804.

Structurei

3D structure databases

ProteinModelPortaliB9LEH8.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the glycosyl hydrolase 13 family.UniRule annotation

Keywords - Domaini

SignalImported

Phylogenomic databases

eggNOGiCOG0366.
HOGENOMiHOG000253313.
KOiK01176.
OMAiRNGMVHL.
OrthoDBiEOG6RZB1B.

Family and domain databases

Gene3Di2.60.40.10. 1 hit.
2.60.40.1180. 1 hit.
3.20.20.80. 1 hit.
InterProiIPR006048. A-amylase_b_C.
IPR006046. Alpha_amylase.
IPR013784. Carb-bd-like_fold.
IPR002044. CBM_fam20.
IPR015902. Glyco_hydro_13.
IPR013780. Glyco_hydro_13_b.
IPR006047. Glyco_hydro_13_cat_dom.
IPR006589. Glyco_hydro_13_sub_cat_dom.
IPR013781. Glyco_hydro_catalytic_dom.
IPR017853. Glycoside_hydrolase_SF.
IPR013783. Ig-like_fold.
[Graphical view]
PANTHERiPTHR10357. PTHR10357. 1 hit.
PfamiPF00128. Alpha-amylase. 1 hit.
PF02806. Alpha-amylase_C. 1 hit.
PF00686. CBM_20. 1 hit.
[Graphical view]
PRINTSiPR00110. ALPHAAMYLASE.
SMARTiSM00642. Aamy. 1 hit.
SM00632. Aamy_C. 1 hit.
SM01065. CBM_2. 1 hit.
[Graphical view]
SUPFAMiSSF49452. SSF49452. 1 hit.
SSF51445. SSF51445. 1 hit.
PROSITEiPS51166. CBM20. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

B9LEH8-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MPGTRFPSLR RLVLVVALLM VVSSLPFGPV HHSTARAQTS SPRTVFVHLF
60 70 80 90 100
EWKWTDIAQE CENFLGPRGF AAVQVSPPQE HAIVAGYPWW QRYQPVSYQL
110 120 130 140 150
TSRSGTRAEF ANMVARCKAV GVDIYVDAVI NHMTGVGSGV GSAGSTYSPY
160 170 180 190 200
NYPGIYQYQD FHHCGRNGND DIQNYGDRYE VQNCELVNLA DLDTGSSYVR
210 220 230 240 250
DRLAAYLNDL ISLGVAGFRI DAAKHIAAGD IAAILSRVNG SPYIYQEVIG
260 270 280 290 300
AAGEPITPWE YTNNGDVTEF KYSNEIGRVF LNGKLAWLSQ FGEAWGMLPS
310 320 330 340 350
DKAIVFVDNH DNQRGHGGGG TVVTYKNGVL YDLANVFMLA WPYGYPQVMS
360 370 380 390 400
SYEFSNDFQG PPSDANGNTR SVYVNGQPNC FGEWKCEHRW RPIANMVAFR
410 420 430 440 450
NATASTFSVS DWWSNGNNQI AFGRGDKGFV VINREDTTLN RTFQTSMAPG
460 470 480 490 500
VYCNVIVADF TNGTCSGQTV TVDSNRRITV SIPPFSALAI HVGAKLSTQP
510 520 530 540 550
ATVAVTFNVN ATTYWGQNVF VVGNIPQLGN WNPAQAVPLS AATYPVWSGT
560 570 580 590
VNLPANTTIE YKYIKRDGSN VVWECCNNRV ITTPGSGSMT LNETWRP
Length:597
Mass (Da):65,644
Last modified:March 24, 2009 - v1
Checksum:i61D00CD5A01F6B19
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001364 Genomic DNA. Translation: ACM55170.1.
RefSeqiYP_002571496.1. NC_012032.1.

Genome annotation databases

EnsemblBacteriaiACM55170; ACM55170; Chy400_3804.
GeneIDi7403671.
KEGGichl:Chy400_3804.
PATRICi21427449. VBIChlSp61043_3991.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001364 Genomic DNA. Translation: ACM55170.1.
RefSeqiYP_002571496.1. NC_012032.1.

3D structure databases

ProteinModelPortaliB9LEH8.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi480224.Chy400_3804.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiACM55170; ACM55170; Chy400_3804.
GeneIDi7403671.
KEGGichl:Chy400_3804.
PATRICi21427449. VBIChlSp61043_3991.

Phylogenomic databases

eggNOGiCOG0366.
HOGENOMiHOG000253313.
KOiK01176.
OMAiRNGMVHL.
OrthoDBiEOG6RZB1B.

Enzyme and pathway databases

BioCyciCSP480224:GHIY-3856-MONOMER.

Family and domain databases

Gene3Di2.60.40.10. 1 hit.
2.60.40.1180. 1 hit.
3.20.20.80. 1 hit.
InterProiIPR006048. A-amylase_b_C.
IPR006046. Alpha_amylase.
IPR013784. Carb-bd-like_fold.
IPR002044. CBM_fam20.
IPR015902. Glyco_hydro_13.
IPR013780. Glyco_hydro_13_b.
IPR006047. Glyco_hydro_13_cat_dom.
IPR006589. Glyco_hydro_13_sub_cat_dom.
IPR013781. Glyco_hydro_catalytic_dom.
IPR017853. Glycoside_hydrolase_SF.
IPR013783. Ig-like_fold.
[Graphical view]
PANTHERiPTHR10357. PTHR10357. 1 hit.
PfamiPF00128. Alpha-amylase. 1 hit.
PF02806. Alpha-amylase_C. 1 hit.
PF00686. CBM_20. 1 hit.
[Graphical view]
PRINTSiPR00110. ALPHAAMYLASE.
SMARTiSM00642. Aamy. 1 hit.
SM00632. Aamy_C. 1 hit.
SM01065. CBM_2. 1 hit.
[Graphical view]
SUPFAMiSSF49452. SSF49452. 1 hit.
SSF51445. SSF51445. 1 hit.
PROSITEiPS51166. CBM20. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 29364 / DSM 637 / Y-400-flImported.

Entry informationi

Entry nameiB9LEH8_CHLSY
AccessioniPrimary (citable) accession number: B9LEH8
Entry historyi
Integrated into UniProtKB/TrEMBL: March 24, 2009
Last sequence update: March 24, 2009
Last modified: January 7, 2015
This is version 40 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.