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B9L9N9 (B9L9N9_NAUPA) Unreviewed, UniProtKB/TrEMBL

Last modified May 1, 2013. Version 30. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesSubmitted name:
D-alanine--D-alanine ligase EMBL ACM93621.1
EC=6.3.2.4 EMBL ACM93621.1
Gene names
Ordered Locus Names:NAMH_0945
OrganismNautilia profundicola (strain ATCC BAA-1463 / DSM 18972 / AmH) [Complete proteome] [HAMAP]
Taxonomic identifier598659 [NCBI]
Taxonomic lineageBacteria › Proteobacteria › Epsilonproteobacteria › Nautiliales › Nautiliaceae › Nautilia ›

Protein attributes

Sequence length344 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Function

Cell wall formation By similarity. SAAS SAAS005905

Catalytic activity

ATP + 2 D-alanine = ADP + phosphate + D-alanyl-D-alanine. SAAS SAAS005905

Cofactor

Binds 2 magnesium or manganese ions per subunit By similarity. SAAS SAAS005905

Pathway

Cell wall biogenesis; peptidoglycan biosynthesis. SAAS SAAS005905

Subcellular location

Cytoplasm By similarity SAAS SAAS005905.

Sequence similarities

Contains 1 ATP-grasp domain. SAAS SAAS005905

Sequences

Sequence LengthMass (Da)Tools
B9L9N9 [UniParc].

Last modified March 24, 2009. Version 1.
Checksum: B70E1338D28E2242

FASTA34439,345
        10         20         30         40         50         60 
MTFALLFGGN SFEHEISIVS AITLKDKIKK HTLEFIYIDQ NRNMYLVDKQ NMKSKYFASG 

        70         80         90        100        110        120 
EYKNSQKIEI TKGGFKYTKG LLKKDVFLNY DAVINLIHGK DGEDGKLAGI LEFFNIKSIT 

       130        140        150        160        170        180 
PNVEASVISY NKVLTKAYAK EIGVNVIDYE IITEPKSSFD FPIIIKPARL GSSIGVSVVK 

       190        200        210        220        230        240 
TQEEFDYAFD VAREFDDLII AEPFIEGIEE YNLAGCLAGG EFMLSNIEKV EKSDFLDFEK 

       250        260        270        280        290        300 
KYMDFSRKNV MLSDVDKDLT ERIKKTFKKI YNSTFKNAII RCDFFVKEGS VYLNEINPIP 

       310        320        330        340 
GSMANYLFDD FDDVLEKLAK NIESEKEVKI DFEYINKIQM AKGK

« Hide

References

[1]"Adaptations to submarine hydrothermal environments exemplified by the genome of Nautilia profundicola."
Campbell B.J., Smith J.L., Hanson T.E., Klotz M.G., Stein L.Y., Lee C.K., Wu D., Robinson J.M., Khouri H.M., Eisen J.A., Cary S.C.
PLoS Genet. 5:E1000362-E1000362(2009) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: ATCC BAA-1463 / DSM 18972 / AmH.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		CP001279 Genomic DNA. Translation: ACM93621.1.
RefSeqYP_002607347.1. NC_012115.1.

3D structure databases

ProteinModelPortalB9L9N9.
ModBaseSearch...

Protein-protein interaction databases

STRING598659.NAMH_0945.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaACM93621; ACM93621; NAMH_0945.
GeneID7505270.
KEGGnam:NAMH_0945.
PATRIC22676601. VBINauPro131435_0910.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG1181.
HOGENOMHOG000102494.
KOK01921.
OMAKYMDFSR.
ProtClustDBPRK01966.

Enzyme and pathway databases

BioCycNPRO598659:GH7N-1563-MONOMER.
UniPathwayUPA00219.

Family and domain databases

Gene3D3.30.1490.20. 1 hit.
3.30.470.20. 2 hits.
3.40.50.20. 1 hit.
InterProIPR011761. ATP-grasp.
IPR013815. ATP_grasp_subdomain_1.
IPR013816. ATP_grasp_subdomain_2.
IPR000291. D-Ala_lig_Van_CS.
IPR005905. D_ala_D_ala.
IPR011095. Dala_Dala_lig_C.
IPR011127. Dala_Dala_lig_N.
IPR016185. PreATP-grasp_dom.
[Graphical view]
PANTHERPTHR23132. PTHR23132. 1 hit.
PfamPF07478. Dala_Dala_lig_C. 1 hit.
PF01820. Dala_Dala_lig_N. 1 hit.
[Graphical view]
SUPFAMSSF52440. PreATP-grasp-like. 1 hit.
TIGRFAMsTIGR01205. D_ala_D_alaTIGR. 1 hit.
PROSITEPS50975. ATP_GRASP. 1 hit.
PS00843. DALA_DALA_LIGASE_1. 1 hit.
PS00844. DALA_DALA_LIGASE_2. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameB9L9N9_NAUPA
AccessionPrimary (citable) accession number: B9L9N9
Entry history
Integrated into UniProtKB/TrEMBL: March 24, 2009
Last sequence update: March 24, 2009
Last modified: May 1, 2013
This is version 30 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
to top of pageNames·Attributes·General annotation·Ontologies·Sequences·References·Cross-refs·Entry info