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B9L728 (B9L728_NAUPA) Unreviewed, UniProtKB/TrEMBL

Last modified January 25, 2012. Version 20. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesRecommended name:
2-dehydro-3-deoxyphosphooctonate aldolase HAMAP MF_00056
EC=2.5.1.55 HAMAP MF_00056
Alternative name(s):
3-deoxy-D-manno-octulosonic acid 8-phosphate synthase HAMAP MF_00056
KDO-8-phosphate synthase HAMAP MF_00056
Phospho-2-dehydro-3-deoxyoctonate aldolase HAMAP MF_00056
Gene names
Name:kdsA HAMAP MF_00056 EMBL ACM92835.1
Ordered Locus Names:NAMH_1800
OrganismNautilia profundicola (strain ATCC BAA-1463 / DSM 18972 / AmH) [Complete proteome] [HAMAP]
Taxonomic identifier598659 [NCBI]
Taxonomic lineageBacteria › Proteobacteria › Epsilonproteobacteria › Nautiliales › Nautiliaceae › Nautilia

Protein attributes

Sequence length261 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Catalytic activity

Phosphoenolpyruvate + D-arabinose 5-phosphate + H2O = 2-dehydro-3-deoxy-D-octonate 8-phosphate + phosphate. HAMAP MF_00056 SAAS SAAS006269

Pathway

Bacterial outer membrane biogenesis; lipopolysaccharide biosynthesis. HAMAP MF_00056 SAAS SAAS006269

Carbohydrate biosynthesis; 3-deoxy-D-manno-octulosonate biosynthesis; 3-deoxy-D-manno-octulosonate from D-ribulose 5-phosphate: step 2/3. HAMAP MF_00056 SAAS SAAS006269

Subcellular location

Cytoplasm By similarity HAMAP MF_00056 SAAS SAAS006269.

Sequence similarities

Belongs to the KdsA family. HAMAP MF_00056

Sequences

Sequence LengthMass (Da)Tools
B9L728 [UniParc].

Last modified March 24, 2009. Version 1.
Checksum: C763ED9E801DA729

FASTA26129,422
        10         20         30         40         50         60 
MILIAGPCVI ESREQIFKIA EYLKPYNEKY DFYFKASYDK ANRTSLNSYR GPGIDKGLEI 

        70         80         90        100        110        120 
LNEVKEKFGY KLLTDVHETW QVKKAAEVVD VLQIPAFLCR QTDLLVEAAK TDKVVNIKKG 

       130        140        150        160        170        180 
QFMNPADMKY SVLKVLQTRG CNEATYENSL KHKVWLTERG TTFGYGNLVV DMRSLYIMRE 

       190        200        210        220        230        240 
YAPVIFDATH AVQMPGGAGG KSSGKREYVP VLSRAAAAVG IDGFFFETHY NPDEALSDGP 

       250        260 
NMITPETLEK TLKEIDCINK C

« Hide

References

[1]"Adaptations to submarine hydrothermal environments exemplified by the genome of Nautilia profundicola."
Campbell B.J., Smith J.L., Hanson T.E., Klotz M.G., Stein L.Y., Lee C.K., Wu D., Robinson J.M., Khouri H.M., Eisen J.A., Cary S.C.
PLoS Genet. 5:E1000362-E1000362(2009) [PubMed: 19197347] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		CP001279 Genomic DNA. Translation: ACM92835.1.
RefSeqYP_002608166.1. NC_012115.1.

3D structure databases

ProteinModelPortalB9L728.
ModBaseSearch...

Protein-protein interaction databases

STRINGB9L728.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

GeneID7504372.
GenomeReviewsGene locus NAMH_1800 in contig CP001279_GR.
KEGGnam:NAMH_1800.
PATRIC22678287. VBINauPro131435_1728.

Organism-specific databases

CMRSearch...

Phylogenomic databases

OMAIMREYAP.
ProtClustDBPRK05198.

Family and domain databases

HAMAPMF_00056. KDO8P_synth.
[Tree]
InterProIPR013785. Aldolase_TIM.
IPR006218. DAHP1/KDSA.
IPR006269. KDO8P_synthase.
[Graphical view]
Gene3DG3DSA:3.20.20.70. Aldolase_TIM. 1 hit.
KOK01627.
PANTHERPTHR21057:SF2. KDO8P_synthase. 1 hit.
PfamPF00793. DAHP_synth_1. 1 hit.
[Graphical view]
TIGRFAMsTIGR01362. KDO8P_synth. 1 hit.
ProtoNetSearch...

Entry information

Entry nameB9L728_NAUPA
AccessionPrimary (citable) accession number: B9L728
Entry history
Integrated into UniProtKB/TrEMBL: March 24, 2009
Last sequence update: March 24, 2009
Last modified: January 25, 2012
This is version 20 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
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