B9KYX2 (B9KYX2_THERP) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Recommended name:
Transcription antitermination protein nusG RuleBase RU000538

Gene names

Name:	nusG EMBL ACM05744.1
Ordered Locus Names:	trd_0680

Organism

Thermomicrobium roseum (strain ATCC 27502 / DSM 5159 / P-2) [Complete proteome] [HAMAP]

Taxonomic identifier

309801 [NCBI]

Taxonomic lineage

Bacteria › Chloroflexi › Thermomicrobiales › Thermomicrobiaceae › Thermomicrobium

Protein attributes

Sequence length	198 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Function	Influences transcription termination and antitermination. Acts as a component of the transcription complex, and interacts with the termination factor rho and RNA polymerase By similarity. SAAS SAAS006645 RuleBase RU000538
Sequence similarities	Belongs to the nusG family. RuleBase RU003559

Ontologies

Keywords
Biological process	Transcription Transcription antitermination SAAS SAAS006645 RuleBase RU000538 Transcription regulation Transcription termination SAAS SAAS006645 RuleBase RU000538
Technical term	Complete proteome
Gene Ontology (GO)
Biological process	positive regulation of transcription elongation from RNA polymerase II promoter Inferred from electronic annotation. Source: InterPro transcription antitermination Inferred from electronic annotation. Source: UniProtKB-KW transcription termination, DNA-dependent Inferred from electronic annotation. Source: UniProtKB-KW
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	B9KYX2 [UniParc]. Last modified March 24, 2009. Version 1. Checksum: ED3E7358709E87F0	FASTA	198	22,617
	10 20 30 40 50 60 MSTMSRSLRE RLAQKRGVVR EGDQQGEWYV LHTYSGYENK VRQNLLHRVE TMDVADKVFE 70 80 90 100 110 120 VVIPMQEEIE IRGGQRHTVQ RKVFPGYVLV RMILDDESWH VVRNTPGVTG FVGVGNRPVP 130 140 150 160 170 180 LDRAEAEAII RGAKAEQPKV RMTLLPGDVV RIIDGPFTDF RGVVDEVDNE KGKVRVLVSF 190 FGRETPVTLD FLQVERET

References

[1]

"Complete genome sequence of the aerobic CO-oxidizing thermophile Thermomicrobium roseum." Wu D., Raymond J., Wu M., Chatterji S., Ren Q., Graham J.E., Bryant D.A., Robb F., Colman A., Tallon L.J., Badger J.H., Madupu R., Ward N.L., Eisen J.A. PLoS ONE 4:E4207-E4207(2009) [PubMed: 19148287] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP001275 Genomic DNA. Translation: ACM05744.1.
RefSeq	YP_002521914.1. NC_011959.1.
3D structure databases
ModBase	Search...
Protein-protein interaction databases
STRING	B9KYX2.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
GeneID	7355245.
GenomeReviews	Gene locus trd_0680 in contig CP001275_GR.
KEGG	tro:trd_0680.
PATRIC	23912562. VBITheRos91376_0655.
Organism-specific databases
CMR	Search...
Phylogenomic databases
OMA	VASGCEK.
ProtClustDB	CLSK2807632.
Family and domain databases
InterPro	IPR005824. KOW. IPR001062. Transcrpt_antiterm_NusG. IPR006645. Transcrpt_antiterm_NusG_N. IPR014722. Transl_SH3-like_sub. IPR008991. Translation_prot_SH3-like. [Graphical view]
Gene3D	G3DSA:2.30.30.30. Ribosomal_L2. 1 hit. G3DSA:3.30.70.940. Transcrpt_antiterm_NusG_N. 1 hit.
KO	K02601.
Pfam	PF00467. KOW. 1 hit. PF02357. NusG. 1 hit. [Graphical view]
PRINTS	PR00338. NUSGTNSCPFCT.
SMART	SM00739. KOW. 1 hit. SM00738. NGN. 1 hit. [Graphical view]
SUPFAM	SSF82679. Transcrpt_antiterm_NusG_N. 1 hit. SSF50104. Transl_SH3_like. 1 hit.
TIGRFAMs	TIGR00922. NusG. 1 hit.
ProtoNet	Search...

Entry information

Entry name

B9KYX2_THERP

Accession

Primary (citable) accession number: B9KYX2

Entry history

Integrated into UniProtKB/TrEMBL:	March 24, 2009
Last sequence update:	March 24, 2009
Last modified:	December 14, 2011
This is version 21 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)