B9KYD3 (RPIA_THERP) Reviewed, UniProtKB/Swiss-Prot

Names and origin

Protein names

Recommended name:
Ribose-5-phosphate isomerase A
EC=5.3.1.6

Alternative name(s):
Phosphoriboisomerase A
Short name=PRI

Gene names

Name:	rpiA
Ordered Locus Names:	trd_0478

Organism

Thermomicrobium roseum (strain ATCC 27502 / DSM 5159 / P-2) [Complete proteome] [HAMAP]

Taxonomic identifier

309801 [NCBI]

Taxonomic lineage

Bacteria › Chloroflexi › Thermomicrobiales › Thermomicrobiaceae › Thermomicrobium

Protein attributes

Sequence length	237 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Catalytic activity	D-ribose 5-phosphate = D-ribulose 5-phosphate. HAMAP MF_00170
Pathway	Carbohydrate degradation; pentose phosphate pathway; D-ribose 5-phosphate from D-ribulose 5-phosphate (non-oxidative stage): step 1/1. HAMAP MF_00170
Sequence similarities	Belongs to the ribose 5-phosphate isomerase family.

Ontologies

Keywords
Molecular function	Isomerase
Technical term	Complete proteome
Gene Ontology (GO)
Biological process	pentose-phosphate shunt, non-oxidative branch Inferred from electronic annotation. Source: InterPro
Molecular function	ribose-5-phosphate isomerase activity Inferred from electronic annotation. Source: EC
Complete GO annotation...

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Molecule processing
	Chain	1 – 237	237	Ribose-5-phosphate isomerase A HAMAP MF_00170		PRO_1000194730

Sequences

	Sequence		Length	Mass (Da)
	B9KYD3 [UniParc]. Last modified March 24, 2009. Version 1. Checksum: D0354BB5E6025DCD	FASTA	237	25,694
	10 20 30 40 50 60 MGTERAKERA ARFAASLVED GMIVGLGSGS TAELAVRALG ERLHDGLRLI GVATSQRTAA 70 80 90 100 110 120 LARRVGIELR DPDSVDRIDL AIDGADEVEE RSLGLLKGRG GALVREKLVA RMARRLVIII 130 140 150 160 170 180 DDSKLVAALG ARFPLPVEVV PFGWRWCARW LEDLGGRPTL RCRPTGHPFR SDNGNLILDV 190 200 210 220 230 AFGAIADPAW LDRTIKMLPG VIDHGLFLDM ADLVIVGSET GIRLLERSRT VSETSKS

References

[1]

"Complete genome sequence of the aerobic CO-oxidizing thermophile Thermomicrobium roseum." Wu D., Raymond J., Wu M., Chatterji S., Ren Q., Graham J.E., Bryant D.A., Robb F., Colman A., Tallon L.J., Badger J.H., Madupu R., Ward N.L., Eisen J.A. PLoS ONE 4:E4207-E4207(2009) [PubMed: 19148287] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: ATCC 27502 / DSM 5159 / P-2.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP001275 Genomic DNA. Translation: ACM04945.1.
RefSeq	YP_002521725.1. NC_011959.1.
3D structure databases
ProteinModelPortal	B9KYD3.
ModBase	Search...
Protein-protein interaction databases
STRING	B9KYD3.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
GeneID	7355779.
GenomeReviews	Gene locus trd_0478 in contig CP001275_GR.
KEGG	tro:trd_0478.
PATRIC	23912170. VBITheRos91376_0467.
Organism-specific databases
CMR	Search...
Phylogenomic databases
OMA	CLAERVR.
Family and domain databases
HAMAP	MF_00170. Rib_5P_isom_A. [Tree]
InterPro	IPR004788. Ribose5P_isomerase_typA. IPR020672. Ribose5P_isomerase_typA_subgr. IPR014036. Tscrpt_reg_HTH_DeoR. [Graphical view]
KO	K01807.
PANTHER	PTHR11934. RpiA. 1 hit.
Pfam	PF00455. DeoR. 1 hit. PF06026. Rib_5-P_isom_A. 1 hit. [Graphical view]
TIGRFAMs	TIGR00021. RpiA. 1 hit.
ProtoNet	Search...

Entry information

Entry name

RPIA_THERP

Accession

Primary (citable) accession number: B9KYD3

Entry history

Integrated into UniProtKB/Swiss-Prot:	July 28, 2009
Last sequence update:	March 24, 2009
Last modified:	January 25, 2012
This is version 21 of the entry and version 1 of the sequence. [Complete history]

Entry status

Reviewed (UniProtKB/Swiss-Prot)

Annotation program

Prokaryotic Protein Annotation Program