B9KXM0 (B9KXM0_THERP) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
DNA polymerase III, epsilon subunit EMBL ACM05471.1

Gene names

Ordered Locus Names:

trd_0207 EMBL ACM05471.1

Organism

Thermomicrobium roseum (strain ATCC 27502 / DSM 5159 / P-2) [Complete proteome] [HAMAP] EMBL ACM05471.1

Taxonomic identifier

309801 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Chloroflexi › Thermomicrobia › Thermomicrobiales › Thermomicrobiaceae › Thermomicrobium › Thermomicrobium roseum

Protein attributes

Sequence length	693 AA.
Sequence status	Complete.
Protein existence	Predicted

General annotation (Comments)

Catalytic activity

Deoxynucleoside triphosphate + DNA(n) = diphosphate + DNA(n+1). SAAS SAAS006054

Ontologies

Keywords
Biological process	DNA replication SAAS SAAS006054
Molecular function	DNA-directed DNA polymerase SAAS SAAS006054 Nucleotidyltransferase Transferase
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	DNA replication Inferred from electronic annotation. Source: UniProtKB-KW
Cellular_component	intracellular Inferred from electronic annotation. Source: InterPro
Molecular_function	DNA binding Inferred from electronic annotation. Source: InterPro DNA-directed DNA polymerase activity Inferred from electronic annotation. Source: UniProtKB-KW exonuclease activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	B9KXM0 [UniParc]. Last modified March 24, 2009. Version 1. Checksum: E8D4DB9040100EE8	FASTA	693	77,438
	10 20 30 40 50 60 MSDQPVEPAY DRLRSRARQL LLARGGIASE EQLIEGLFGS LGNRRLWAPF LAQLLETDAE 70 80 90 100 110 120 IVRRPDGTWA LRRRPLVPSR GWPRSFVALD VETTGLRPAR HRIIEIGAVR YEDGCCVERF 130 140 150 160 170 180 SVLVNPHRRL PVYIVRLTGI RDEDLLTAPS FVDVAAAFRV FLGESTVIGY NVGFDLDFLN 190 200 210 220 230 240 AELRRIGQGP LPNPALDVLP LARALLTANG RYDLDAICRS IGLARGTRHR ALPDAEATAV 250 260 270 280 290 300 LYLHLVERAE QVGYRSPSDL QPAATRRTIV VEPVARGRAV LDQRLLADTP ELPGVYLMRD 310 320 330 340 350 360 ALGRVLYVGK ARNLRQRVRS YFSQPLGYTR KMDGLLESVA EIETVVTGSE LEALLLESQF 370 380 390 400 410 420 VQRYKPPYNT QLRNHEAYPY VKVELGRPWP RLMLARQRDD DDAVYVGPFR STAAARSVVE 430 440 450 460 470 480 LLHQLLPLRT CHRSFRDARS YGRPCLQLTL GRCIGPCTGC VTPDEYRALV DCALRYLSGE 490 500 510 520 530 540 TSVVVERAQQ LLADAVERLD FERAARLRDL LRRSEELVFS HRLVRQTISG RPCVIVTPCP 550 560 570 580 590 600 ETGDRAFLLI VAGRLWARVV ADPREHDAAV AARLGAAWER AQQAAPWTLD QDSLDAAVII 610 620 630 640 650 660 ARWLSEHAED PTVFFLEHPV DWLALVRNGR SLPASAFAVH APVDDENGTT KRTRGADSER 670 680 690 GTQCEGTPGK HRRARPSLHA LRSMADPHSG GAR

References

[1]

"Complete genome sequence of the aerobic CO-oxidizing thermophile Thermomicrobium roseum." Wu D., Raymond J., Wu M., Chatterji S., Ren Q., Graham J.E., Bryant D.A., Robb F., Colman A., Tallon L.J., Badger J.H., Madupu R., Ward N.L., Eisen J.A. PLoS ONE 4:E4207-E4207(2009) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: ATCC 27502 / DSM 5159 / P-2.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP001275 Genomic DNA. Translation: ACM05471.1.
RefSeq	YP_002521462.1. NC_011959.1.
3D structure databases
ProteinModelPortal	B9KXM0.
ModBase	Search...
Protein-protein interaction databases
STRING	309801.trd_0207.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	ACM05471; ACM05471; trd_0207.
GeneID	7355256.
KEGG	tro:trd_0207.
PATRIC	23911636. VBITheRos91376_0206.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	COG0322.
HOGENOM	HOG000091770.
KO	K02342.
OMA	YTRKMDG.
ProtClustDB	CLSK2807441.
Family and domain databases
Gene3D	3.40.1440.10. 1 hit. 4.10.860.10. 1 hit.
InterPro	IPR006054. DnaQ. IPR006055. Exonuclease. IPR013520. Exonuclease_RNaseT/DNA_pol3. IPR027299. GIY-YIG_dom. IPR000305. GIY-YIG_SF. IPR012337. RNaseH-like_dom. IPR001943. UVR_dom. [Graphical view]
Pfam	PF01541. GIY-YIG. 1 hit. PF00929. RNase_T. 1 hit. PF02151. UVR. 1 hit. [Graphical view]
SMART	SM00479. EXOIII. 1 hit. SM00465. GIYc. 1 hit. [Graphical view]
SUPFAM	SSF53098. RNaseH_fold. 1 hit. SSF46600. UvrB_C. 1 hit. SSF82771. UvrC_N. 1 hit.
TIGRFAMs	TIGR00573. dnaq. 1 hit.
PROSITE	PS50164. GIY_YIG. 1 hit. PS50151. UVR. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

B9KXM0_THERP

Accession

Primary (citable) accession number: B9KXM0

Entry history

Integrated into UniProtKB/TrEMBL:	March 24, 2009
Last sequence update:	March 24, 2009
Last modified:	May 1, 2013
This is version 36 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)