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Protein
Submitted name:

DNA polymerase III, epsilon subunit

Gene

trd_0207

Organism
Thermomicrobium roseum (strain ATCC 27502 / DSM 5159 / P-2)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

  1. DNA binding Source: InterPro
  2. DNA-directed DNA polymerase activity Source: InterPro
  3. exonuclease activity Source: InterPro

GO - Biological processi

  1. DNA replication Source: InterPro
Complete GO annotation...

Enzyme and pathway databases

BioCyciTROS309801:GI0S-205-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
DNA polymerase III, epsilon subunitImported
Gene namesi
Ordered Locus Names:trd_0207Imported
OrganismiThermomicrobium roseum (strain ATCC 27502 / DSM 5159 / P-2)Imported
Taxonomic identifieri309801 [NCBI]
Taxonomic lineageiBacteriaChloroflexiThermomicrobialesThermomicrobiaceaeThermomicrobium
ProteomesiUP000000447 Componenti: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi309801.trd_0207.

Structurei

3D structure databases

ProteinModelPortaliB9KXM0.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Contains UVR domain.SAAS annotation

Phylogenomic databases

eggNOGiCOG0322.
HOGENOMiHOG000091770.
KOiK02342.
OMAiYTRKMDG.
OrthoDBiEOG6PKFH3.

Family and domain databases

Gene3Di3.30.420.10. 1 hit.
3.40.1440.10. 1 hit.
4.10.860.10. 1 hit.
InterProiIPR006054. DnaQ.
IPR006055. Exonuclease.
IPR013520. Exonuclease_RNaseT/DNA_pol3.
IPR027299. GIY-YIG_dom.
IPR000305. GIY-YIG_SF.
IPR012337. RNaseH-like_dom.
IPR001943. UVR_dom.
[Graphical view]
PfamiPF01541. GIY-YIG. 1 hit.
PF00929. RNase_T. 1 hit.
PF02151. UVR. 1 hit.
[Graphical view]
SMARTiSM00479. EXOIII. 1 hit.
SM00465. GIYc. 1 hit.
[Graphical view]
SUPFAMiSSF46600. SSF46600. 1 hit.
SSF53098. SSF53098. 1 hit.
SSF82771. SSF82771. 1 hit.
TIGRFAMsiTIGR00573. dnaq. 1 hit.
PROSITEiPS50164. GIY_YIG. 1 hit.
PS50151. UVR. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

B9KXM0-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSDQPVEPAY DRLRSRARQL LLARGGIASE EQLIEGLFGS LGNRRLWAPF
60 70 80 90 100
LAQLLETDAE IVRRPDGTWA LRRRPLVPSR GWPRSFVALD VETTGLRPAR
110 120 130 140 150
HRIIEIGAVR YEDGCCVERF SVLVNPHRRL PVYIVRLTGI RDEDLLTAPS
160 170 180 190 200
FVDVAAAFRV FLGESTVIGY NVGFDLDFLN AELRRIGQGP LPNPALDVLP
210 220 230 240 250
LARALLTANG RYDLDAICRS IGLARGTRHR ALPDAEATAV LYLHLVERAE
260 270 280 290 300
QVGYRSPSDL QPAATRRTIV VEPVARGRAV LDQRLLADTP ELPGVYLMRD
310 320 330 340 350
ALGRVLYVGK ARNLRQRVRS YFSQPLGYTR KMDGLLESVA EIETVVTGSE
360 370 380 390 400
LEALLLESQF VQRYKPPYNT QLRNHEAYPY VKVELGRPWP RLMLARQRDD
410 420 430 440 450
DDAVYVGPFR STAAARSVVE LLHQLLPLRT CHRSFRDARS YGRPCLQLTL
460 470 480 490 500
GRCIGPCTGC VTPDEYRALV DCALRYLSGE TSVVVERAQQ LLADAVERLD
510 520 530 540 550
FERAARLRDL LRRSEELVFS HRLVRQTISG RPCVIVTPCP ETGDRAFLLI
560 570 580 590 600
VAGRLWARVV ADPREHDAAV AARLGAAWER AQQAAPWTLD QDSLDAAVII
610 620 630 640 650
ARWLSEHAED PTVFFLEHPV DWLALVRNGR SLPASAFAVH APVDDENGTT
660 670 680 690
KRTRGADSER GTQCEGTPGK HRRARPSLHA LRSMADPHSG GAR
Length:693
Mass (Da):77,438
Last modified:March 24, 2009 - v1
Checksum:iE8D4DB9040100EE8
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001275 Genomic DNA. Translation: ACM05471.1.
RefSeqiYP_002521462.1. NC_011959.1.

Genome annotation databases

EnsemblBacteriaiACM05471; ACM05471; trd_0207.
KEGGitro:trd_0207.
PATRICi23911636. VBITheRos91376_0206.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001275 Genomic DNA. Translation: ACM05471.1.
RefSeqiYP_002521462.1. NC_011959.1.

3D structure databases

ProteinModelPortaliB9KXM0.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi309801.trd_0207.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiACM05471; ACM05471; trd_0207.
KEGGitro:trd_0207.
PATRICi23911636. VBITheRos91376_0206.

Phylogenomic databases

eggNOGiCOG0322.
HOGENOMiHOG000091770.
KOiK02342.
OMAiYTRKMDG.
OrthoDBiEOG6PKFH3.

Enzyme and pathway databases

BioCyciTROS309801:GI0S-205-MONOMER.

Family and domain databases

Gene3Di3.30.420.10. 1 hit.
3.40.1440.10. 1 hit.
4.10.860.10. 1 hit.
InterProiIPR006054. DnaQ.
IPR006055. Exonuclease.
IPR013520. Exonuclease_RNaseT/DNA_pol3.
IPR027299. GIY-YIG_dom.
IPR000305. GIY-YIG_SF.
IPR012337. RNaseH-like_dom.
IPR001943. UVR_dom.
[Graphical view]
PfamiPF01541. GIY-YIG. 1 hit.
PF00929. RNase_T. 1 hit.
PF02151. UVR. 1 hit.
[Graphical view]
SMARTiSM00479. EXOIII. 1 hit.
SM00465. GIYc. 1 hit.
[Graphical view]
SUPFAMiSSF46600. SSF46600. 1 hit.
SSF53098. SSF53098. 1 hit.
SSF82771. SSF82771. 1 hit.
TIGRFAMsiTIGR00573. dnaq. 1 hit.
PROSITEiPS50164. GIY_YIG. 1 hit.
PS50151. UVR. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "Complete genome sequence of the aerobic CO-oxidizing thermophile Thermomicrobium roseum."
    Wu D., Raymond J., Wu M., Chatterji S., Ren Q., Graham J.E., Bryant D.A., Robb F., Colman A., Tallon L.J., Badger J.H., Madupu R., Ward N.L., Eisen J.A.
    PLoS ONE 4:E4207-E4207(2008) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 27502 / DSM 5159 / P-2Imported.

Entry informationi

Entry nameiB9KXM0_THERP
AccessioniPrimary (citable) accession number: B9KXM0
Entry historyi
Integrated into UniProtKB/TrEMBL: March 24, 2009
Last sequence update: March 24, 2009
Last modified: April 1, 2015
This is version 49 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.