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Protein
Submitted name:

DNA polymerase III, epsilon subunit

Gene

trd_0207

Organism
Thermomicrobium roseum (strain ATCC 27502 / DSM 5159 / P-2)
Status
Unreviewed-Annotation score: -Protein predictedi

Functioni

GO - Molecular functioni

GO - Biological processi

Names & Taxonomyi

Protein namesi
Submitted name:
DNA polymerase III, epsilon subunitImported
Gene namesi
Ordered Locus Names:trd_0207Imported
OrganismiThermomicrobium roseum (strain ATCC 27502 / DSM 5159 / P-2)Imported
Taxonomic identifieri309801 [NCBI]
Taxonomic lineageiBacteriaChloroflexiThermomicrobialesThermomicrobiaceaeThermomicrobium
Proteomesi
  • UP000000447 Componenti: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi309801.trd_0207

Structurei

3D structure databases

ProteinModelPortaliB9KXM0
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini291 – 370GIY-YIGInterPro annotationAdd BLAST80
Domaini482 – 517UVRInterPro annotationAdd BLAST36

Coiled coil

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Coiled coili485 – 505Sequence analysisAdd BLAST21

Keywords - Domaini

Coiled coilSequence analysis

Phylogenomic databases

eggNOGiENOG4105DE5 Bacteria
COG0322 LUCA
COG2176 LUCA
HOGENOMiHOG000091770
KOiK02342
OMAiRECDDER
OrthoDBiPOG091H01BK

Family and domain databases

Gene3Di3.30.420.10, 1 hit
3.40.1440.10, 1 hit
InterProiView protein in InterPro
IPR006054 DnaQ
IPR013520 Exonuclease_RNaseT/DNA_pol3
IPR000305 GIY-YIG_endonuc
IPR035901 GIY-YIG_endonuc_sf
IPR012337 RNaseH-like_sf
IPR036397 RNaseH_sf
IPR001943 UVR_dom
IPR036876 UVR_dom_sf
PfamiView protein in Pfam
PF01541 GIY-YIG, 1 hit
PF00929 RNase_T, 1 hit
PF02151 UVR, 1 hit
SMARTiView protein in SMART
SM00479 EXOIII, 1 hit
SM00465 GIYc, 1 hit
SUPFAMiSSF46600 SSF46600, 1 hit
SSF53098 SSF53098, 1 hit
SSF82771 SSF82771, 1 hit
TIGRFAMsiTIGR00573 dnaq, 1 hit
PROSITEiView protein in PROSITE
PS50164 GIY_YIG, 1 hit
PS50151 UVR, 1 hit

Sequencei

Sequence statusi: Complete.

B9KXM0-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSDQPVEPAY DRLRSRARQL LLARGGIASE EQLIEGLFGS LGNRRLWAPF
60 70 80 90 100
LAQLLETDAE IVRRPDGTWA LRRRPLVPSR GWPRSFVALD VETTGLRPAR
110 120 130 140 150
HRIIEIGAVR YEDGCCVERF SVLVNPHRRL PVYIVRLTGI RDEDLLTAPS
160 170 180 190 200
FVDVAAAFRV FLGESTVIGY NVGFDLDFLN AELRRIGQGP LPNPALDVLP
210 220 230 240 250
LARALLTANG RYDLDAICRS IGLARGTRHR ALPDAEATAV LYLHLVERAE
260 270 280 290 300
QVGYRSPSDL QPAATRRTIV VEPVARGRAV LDQRLLADTP ELPGVYLMRD
310 320 330 340 350
ALGRVLYVGK ARNLRQRVRS YFSQPLGYTR KMDGLLESVA EIETVVTGSE
360 370 380 390 400
LEALLLESQF VQRYKPPYNT QLRNHEAYPY VKVELGRPWP RLMLARQRDD
410 420 430 440 450
DDAVYVGPFR STAAARSVVE LLHQLLPLRT CHRSFRDARS YGRPCLQLTL
460 470 480 490 500
GRCIGPCTGC VTPDEYRALV DCALRYLSGE TSVVVERAQQ LLADAVERLD
510 520 530 540 550
FERAARLRDL LRRSEELVFS HRLVRQTISG RPCVIVTPCP ETGDRAFLLI
560 570 580 590 600
VAGRLWARVV ADPREHDAAV AARLGAAWER AQQAAPWTLD QDSLDAAVII
610 620 630 640 650
ARWLSEHAED PTVFFLEHPV DWLALVRNGR SLPASAFAVH APVDDENGTT
660 670 680 690
KRTRGADSER GTQCEGTPGK HRRARPSLHA LRSMADPHSG GAR
Length:693
Mass (Da):77,438
Last modified:March 24, 2009 - v1
Checksum:iE8D4DB9040100EE8
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001275 Genomic DNA Translation: ACM05471.1

Genome annotation databases

EnsemblBacteriaiACM05471; ACM05471; trd_0207
KEGGitro:trd_0207

Entry informationi

Entry nameiB9KXM0_THERP
AccessioniPrimary (citable) accession number: B9KXM0
Entry historyiIntegrated into UniProtKB/TrEMBL: March 24, 2009
Last sequence update: March 24, 2009
Last modified: February 28, 2018
This is version 65 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported
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Main funding by: National Institutes of Health