B9KXC6 (B9KXC6_THERP) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Recommended name:
Ribosome maturation factor rimM HAMAP MF_00014

Gene names

Name:	rimM HAMAP MF_00014 EMBL ACM04633.1
Ordered Locus Names:	trd_0111

Organism

Thermomicrobium roseum (strain ATCC 27502 / DSM 5159 / P-2) [Complete proteome] [HAMAP]

Taxonomic identifier

309801 [NCBI]

Taxonomic lineage

Bacteria › Chloroflexi › Thermomicrobiales › Thermomicrobiaceae › Thermomicrobium

Protein attributes

Sequence length	184 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Function	An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after rbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes By similarity. HAMAP MF_00014
Subunit structure	Binds ribosomal protein S19 By similarity. HAMAP MF_00014
Subcellular location	Cytoplasm By similarity HAMAP MF_00014.
Domain	The PRC barrel domain binds ribosomal protein S19 By similarity. HAMAP MF_00014
Sequence similarities	Belongs to the rimM family. HAMAP MF_00014 Contains 1 PRC barrel domain. HAMAP MF_00014

Ontologies

Keywords
Biological process	Ribosome biogenesis HAMAP MF_00014
Cellular component	Cytoplasm HAMAP MF_00014
Molecular function	Chaperone HAMAP MF_00014
Technical term	Complete proteome
Gene Ontology (GO)
Biological process	rRNA processing Inferred from electronic annotation. Source: InterPro ribosomal small subunit biogenesis Inferred from electronic annotation. Source: HAMAP
Cellular component	ribosome Inferred from electronic annotation. Source: InterPro
Molecular function	ribosome binding Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Regions
	Domain	107 – 181	75	PRC barrel By similarity HAMAP MF_00014

Sequences

	Sequence		Length	Mass (Da)
	B9KXC6 [UniParc]. Last modified March 24, 2009. Version 1. Checksum: 1C9532A9E4271BD9	FASTA	184	20,815
	10 20 30 40 50 60 MTRSTPNRQP PVERPASPER LSIGRIVGAH GVRGTVKLKI WTHFPERIPH LEYVYLGEEP 70 80 90 100 110 120 TPRRLLRARV QGDLAFLQLE GITTRNEAEA MRGVVVRIDR SQAAPLGEDE YYQFEILGLQ 130 140 150 160 170 180 VVDEAGNVLG RVIEILETGA NDVYVVQRPD GSELLLPAIR SVILAVDLEQ QRLVVRPPRY YDEE

References

[1]

"Complete genome sequence of the aerobic CO-oxidizing thermophile Thermomicrobium roseum." Wu D., Raymond J., Wu M., Chatterji S., Ren Q., Graham J.E., Bryant D.A., Robb F., Colman A., Tallon L.J., Badger J.H., Madupu R., Ward N.L., Eisen J.A. PLoS ONE 4:E4207-E4207(2009) [PubMed: 19148287] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP001275 Genomic DNA. Translation: ACM04633.1.
RefSeq	YP_002521368.1. NC_011959.1.
3D structure databases
ProteinModelPortal	B9KXC6.
ModBase	Search...
Protein-protein interaction databases
STRING	B9KXC6.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
GeneID	7355372.
GenomeReviews	Gene locus trd_0111 in contig CP001275_GR.
KEGG	tro:trd_0111.
PATRIC	23911452. VBITheRos91376_0115.
Organism-specific databases
CMR	Search...
Phylogenomic databases
OMA	DLIGMEV.
ProtClustDB	CLSK2807406.
Family and domain databases
HAMAP	MF_00014. Ribosome_mat_RimM. [Tree]
InterPro	IPR011961. 16S_RimM. IPR007903. PRC_barrel. IPR011033. PRC_barrell-like. IPR002676. RimM. IPR009000. Transl_elong_init/rib_B-barrel. [Graphical view]
Gene3D	G3DSA:2.40.30.60. G3DSA:2.40.30.60. 1 hit.
KO	K02860.
Pfam	PF05239. PRC. 1 hit. PF01782. RimM. 1 hit. [Graphical view]
SUPFAM	SSF50346. PRCH_cytoplasmic. 1 hit. SSF50447. Translat_factor. 1 hit.
TIGRFAMs	TIGR02273. 16S_RimM. 1 hit.
ProtoNet	Search...

Entry information

Entry name

B9KXC6_THERP

Accession

Primary (citable) accession number: B9KXC6

Entry history

Integrated into UniProtKB/TrEMBL:	March 24, 2009
Last sequence update:	March 24, 2009
Last modified:	December 14, 2011
This is version 19 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)