B9KXA3 (B9KXA3_RHOSK) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
2-dehydro-3-deoxyphosphooctonate aldolase EMBL ACM04415.1

Gene names

Ordered Locus Names:

RSKD131_4555 EMBL ACM04415.1

Encoded on

Plasmid pRSKD131B EMBL ACM04415.1

Organism

Rhodobacter sphaeroides (strain KD131 / KCTC 12085) [Complete proteome] [HAMAP] EMBL ACM04415.1

Taxonomic identifier

557760 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Proteobacteria › Alphaproteobacteria › Rhodobacterales › Rhodobacteraceae › Rhodobacter › Rhodobacter sphaeroides

Protein attributes

Sequence length	669 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Catalytic activity	Phosphoenolpyruvate + D-arabinose 5-phosphate + H2O = 2-dehydro-3-deoxy-D-octonate 8-phosphate + phosphate. SAAS SAAS006218
Pathway	Bacterial outer membrane biogenesis; lipopolysaccharide biosynthesis. SAAS SAAS006218 Carbohydrate biosynthesis; 3-deoxy-D-manno-octulosonate biosynthesis; 3-deoxy-D-manno-octulosonate from D-ribulose 5-phosphate: step 2/3. SAAS SAAS006218
Subcellular location	Cytoplasm By similarity SAAS SAAS006218.

Ontologies

Keywords
Biological process	Lipopolysaccharide biosynthesis SAAS SAAS006218
Cellular component	Cytoplasm SAAS SAAS006218
Molecular function	Transferase SAAS SAAS006218
Technical term	Complete proteome Plasmid EMBL ACM04415.1
Gene Ontology (GO)
Biological_process	lipopolysaccharide biosynthetic process Inferred from electronic annotation. Source: UniProtKB-UniPathway
Cellular_component	cytoplasm Inferred from electronic annotation. Source: UniProtKB-SubCell
Molecular_function	3-deoxy-8-phosphooctulonate synthase activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	B9KXA3 [UniParc]. Last modified March 24, 2009. Version 1. Checksum: 8D3587D0D551B1A9	FASTA	669	70,605
	10 20 30 40 50 60 MDRLSFPAAA PGRAGARLRL PSLVSILCRG QAMLFPHRRD RHAAPTVPKS ANGFNRLDLR 70 80 90 100 110 120 LRGTPEGPGA GSPGLDAAPP GPSVTEGLHR GGGGGLDRRA VGGGQGAVPT DPVRRAHLDP 130 140 150 160 170 180 GPGRLEPQPE LPPEPGHAAL GIPAEILEPQ DRIAVAEHRL GMALHPEIAL GPEPRPVGGR 190 200 210 220 230 240 ARAPGHMALI LPAVARERHV APVAHHMDEA QPGHERHREG QQEHAARVLP APEGLARMEG 250 260 270 280 290 300 QMLPQRRAPE GQIGLLGPAA LEQPRAARRQ RLDRRDQRER ISGLVPRAPE IAARRPQELA 310 320 330 340 350 360 RHPRARAAAC AENEGRGLGK VPVHRIVLLP KGPSFPAGPG ELKAHSGLAA AGDPPARARG 370 380 390 400 410 420 RREAGPMAAP PADLNPARAW HKGGTEARET AMTETPTIVT IGDIAIGGGH PIALITGPCQ 430 440 450 460 470 480 LESLDHARMM AERIAEACAP TGTKFIFKAS YDKANRSSLS TARGLGMEKG LEILGRIREE 490 500 510 520 530 540 FGVPVLTDVH EPGHCATAAE VCDVLQIPAF LCRQTDLLLA AGETGRAVNV KKGQFLAPWD 550 560 570 580 590 600 MKNVADKVAS TGNRRILLCE RGTSFGYNTL VTDFRGLPTM AATGWPVVFD ATHSVQQPGG 610 620 630 640 650 660 LGGSSGGQRE FAPVLARAAC AVGVSALFIE THEDPDRAPS DGPNMIPVDR MGRLIADLCA FDALAKSLA

References

[1]	"Complete genome sequence of Rhodobacter sphaeroides KD131." Lim S.K., Kim S.J., Cha S.H., Oh Y.K., Rhee H.J., Kim M.S., Lee J.K. J. Bacteriol. 191:1118-1119(2009) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: KD131 / KCTC 12085.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP001153 Genomic DNA. Translation: ACM04415.1.
RefSeq	YP_002523268.1. NC_011960.1.
3D structure databases
ProteinModelPortal	B9KXA3.
ModBase	Search...
Protein-protein interaction databases
STRING	557760.RSKD131_4555.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	ACM04415; ACM04415; RSKD131_4555.
GeneID	7356534.
KEGG	rsk:RSKD131_4555.
PATRIC	23178766. VBIRhoSph125910_1260.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	COG2877.
Enzyme and pathway databases
BioCyc	RSPH557760:GH1P-4624-MONOMER.
UniPathway	UPA00030. UPA00357; UER00474.
Family and domain databases
Gene3D	3.20.20.70. 1 hit.
HAMAP	MF_00056. KDO8P_synth.
InterPro	IPR013785. Aldolase_TIM. IPR006218. DAHP1/KDSA. IPR006269. KDO8P_synthase. [Graphical view]
PANTHER	PTHR21057:SF2. PTHR21057:SF2. 1 hit.
Pfam	PF00793. DAHP_synth_1. 1 hit. [Graphical view]
TIGRFAMs	TIGR01362. KDO8P_synth. 1 hit.
ProtoNet	Search...

Entry information

Entry name

B9KXA3_RHOSK

Accession

Primary (citable) accession number: B9KXA3

Entry history

Integrated into UniProtKB/TrEMBL:	March 24, 2009
Last sequence update:	March 24, 2009
Last modified:	May 29, 2013
This is version 28 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)