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B9KRR2

- B9KRR2_RHOSK

UniProt

B9KRR2 - B9KRR2_RHOSK

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Protein
Submitted name:

ATP dependent DNA ligase

Gene

RSKD131_0994

Organism
Rhodobacter sphaeroides (strain KD131 / KCTC 12085)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA ligase (ATP) activity Source: InterPro
  3. DNA primase activity Source: InterPro

GO - Biological processi

  1. DNA recombination Source: InterPro
  2. DNA repair Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciRSPH557760:GH1P-1003-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
ATP dependent DNA ligaseImported
Gene namesi
Ordered Locus Names:RSKD131_0994Imported
OrganismiRhodobacter sphaeroides (strain KD131 / KCTC 12085)Imported
Taxonomic identifieri557760 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhodobacteralesRhodobacteraceaeRhodobacter
ProteomesiUP000001597: Chromosome 1

Interactioni

Protein-protein interaction databases

STRINGi557760.RSKD131_0994.

Family & Domainsi

Phylogenomic databases

eggNOGiCOG3285.
HOGENOMiHOG000222509.
KOiK01971.
OMAiDWTIRSI.
OrthoDBiEOG661H49.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR002755. DNA_primase_S.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF01896. DNA_primase_S. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

B9KRR2-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MSRQEPPMPA NPRQDLDRYR AKRDFARTPE PQGRSEAPRP EAESLSFVVQ
60 70 80 90 100
KHAASRLHWD FRLEWNGVLL SWAVTRGPSP DPSARRLAVR TEDHPLDYAE
110 120 130 140 150
FEGTIPKGEY GGGTVMLWDR GTWEPQGDFA EGLRTGQLKI RLAGERMRGR
160 170 180 190 200
WTLVRMKPRP REKAENWLLI KEHDVHESAQ TEELVERHMT SVATGRTMEQ
210 220 230 240 250
IAAGKAPPRR TRKAALPAFR PLQLARLVSA APEGEDWIHE TKFDGYRCLA
260 270 280 290 300
ALAGGRARLY TRSGLDWTAK FGALVEDIEA LEAQEALIDG EVIAPGREGG
310 320 330 340 350
SFSELQARLK SGGQLLFMAF DLLALDGEDL TGQPLLARKE RLETLIGKGR
360 370 380 390 400
GAVRFSGHIR GHGPEVHERI CAAGLEGIVS KRASAPYAGS RNGDWLKVKC
410 420 430 440 450
THRQEFVICG WNASDKPGRP FASLVMGSYE KSRLVYRGSV GSGFGAPLFR
460 470 480 490 500
ELKPLLAERA QGACPFGRTP AKAKGAHWLK PELVAEVSFT ELTAEGHIRH
510 520 530 540 550
GVFAGLRSDK DAREVRLEKP APEKPAPRPR KARAGKKGTK TARPDAPSPD
560 570 580 590 600
EPAPEPARKH RKSGGEKKET TMARPDDLRV AGIRISHPDR RIYDRPAVTK
610 620 630 640 650
REVAEHAEAL APRMLRFLKD RPVSLLRCPD GAAGECFFQK HRTRGMPVAM
660 670 680 690 700
KTVPVETKSG LEDFITLPDV AALVGATQMG TLEFHIWGSR NRSLQRPDRL
710 720 730 740 750
VFDLDPDESL DFAHVRTAAA ELRGLLTDLG LPSVPMLSGG KGVHVIVPLK
760 770 780 790 800
PKAEWESVKL FSRALATHLA QEAPDRYTAT MAKAGRKGRI FIDWLRNDRG
810 820 830 840 850
STAIAPYSLR ARPGAPVATP VDWDELASAR SGGDWTIRSI RDRLDRPCPL
860 870
AEASARPATL GRTVIGRLER LVAGGKP
Length:877
Mass (Da):96,832
Last modified:March 24, 2009 - v1
Checksum:i03568BF0C300C671
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP001150 Genomic DNA. Translation: ACM00854.1.
RefSeqiYP_002525355.1. NC_011963.1.

Genome annotation databases

EnsemblBacteriaiACM00854; ACM00854; RSKD131_0994.
GeneIDi7359531.
KEGGirsk:RSKD131_0994.
PATRICi23181089. VBIRhoSph125910_2409.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP001150 Genomic DNA. Translation: ACM00854.1 .
RefSeqi YP_002525355.1. NC_011963.1.

3D structure databases

ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 557760.RSKD131_0994.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai ACM00854 ; ACM00854 ; RSKD131_0994 .
GeneIDi 7359531.
KEGGi rsk:RSKD131_0994.
PATRICi 23181089. VBIRhoSph125910_2409.

Phylogenomic databases

eggNOGi COG3285.
HOGENOMi HOG000222509.
KOi K01971.
OMAi DWTIRSI.
OrthoDBi EOG661H49.

Enzyme and pathway databases

BioCyci RSPH557760:GH1P-1003-MONOMER.

Family and domain databases

Gene3Di 2.40.50.140. 1 hit.
InterProi IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR002755. DNA_primase_S.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view ]
Pfami PF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF01896. DNA_primase_S. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view ]
SUPFAMi SSF50249. SSF50249. 1 hit.
TIGRFAMsi TIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEi PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. "Complete genome sequence of Rhodobacter sphaeroides KD131."
    Lim S.-K., Kim S.J., Cha S.H., Oh Y.-K., Rhee H.-J., Kim M.-S., Lee J.K.
    J. Bacteriol. 191:1118-1119(2009) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: KD131 / KCTC 12085Imported.

Entry informationi

Entry nameiB9KRR2_RHOSK
AccessioniPrimary (citable) accession number: B9KRR2
Entry historyi
Integrated into UniProtKB/TrEMBL: March 24, 2009
Last sequence update: March 24, 2009
Last modified: October 29, 2014
This is version 39 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteomeImported

External Data

Dasty 3