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B9KRR2

- B9KRR2_RHOSK

UniProt

B9KRR2 - B9KRR2_RHOSK

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Protein
Submitted name:

ATP dependent DNA ligase

Gene
RSKD131_0994
Organism
Rhodobacter sphaeroides (strain KD131 / KCTC 12085)
Status
Unreviewed - Annotation score: 1 out of 5 - Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA ligase (ATP) activity Source: InterPro
  3. DNA primase activity Source: InterPro

GO - Biological processi

  1. DNA recombination Source: InterPro
  2. DNA repair Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciRSPH557760:GH1P-1003-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
ATP dependent DNA ligaseImported
Gene namesi
Ordered Locus Names:RSKD131_0994Imported
OrganismiRhodobacter sphaeroides (strain KD131 / KCTC 12085)Imported
Taxonomic identifieri557760 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhodobacteralesRhodobacteraceaeRhodobacter
ProteomesiUP000001597: Chromosome 1

Interactioni

Protein-protein interaction databases

STRINGi557760.RSKD131_0994.

Family & Domainsi

Phylogenomic databases

eggNOGiCOG3285.
HOGENOMiHOG000222509.
KOiK01971.
OMAiDWTIRSI.
OrthoDBiEOG661H49.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR002755. DNA_primase_S.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF01896. DNA_primase_S. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

B9KRR2-1 [UniParc]FASTAAdd to Basket

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MSRQEPPMPA NPRQDLDRYR AKRDFARTPE PQGRSEAPRP EAESLSFVVQ    50
KHAASRLHWD FRLEWNGVLL SWAVTRGPSP DPSARRLAVR TEDHPLDYAE 100
FEGTIPKGEY GGGTVMLWDR GTWEPQGDFA EGLRTGQLKI RLAGERMRGR 150
WTLVRMKPRP REKAENWLLI KEHDVHESAQ TEELVERHMT SVATGRTMEQ 200
IAAGKAPPRR TRKAALPAFR PLQLARLVSA APEGEDWIHE TKFDGYRCLA 250
ALAGGRARLY TRSGLDWTAK FGALVEDIEA LEAQEALIDG EVIAPGREGG 300
SFSELQARLK SGGQLLFMAF DLLALDGEDL TGQPLLARKE RLETLIGKGR 350
GAVRFSGHIR GHGPEVHERI CAAGLEGIVS KRASAPYAGS RNGDWLKVKC 400
THRQEFVICG WNASDKPGRP FASLVMGSYE KSRLVYRGSV GSGFGAPLFR 450
ELKPLLAERA QGACPFGRTP AKAKGAHWLK PELVAEVSFT ELTAEGHIRH 500
GVFAGLRSDK DAREVRLEKP APEKPAPRPR KARAGKKGTK TARPDAPSPD 550
EPAPEPARKH RKSGGEKKET TMARPDDLRV AGIRISHPDR RIYDRPAVTK 600
REVAEHAEAL APRMLRFLKD RPVSLLRCPD GAAGECFFQK HRTRGMPVAM 650
KTVPVETKSG LEDFITLPDV AALVGATQMG TLEFHIWGSR NRSLQRPDRL 700
VFDLDPDESL DFAHVRTAAA ELRGLLTDLG LPSVPMLSGG KGVHVIVPLK 750
PKAEWESVKL FSRALATHLA QEAPDRYTAT MAKAGRKGRI FIDWLRNDRG 800
STAIAPYSLR ARPGAPVATP VDWDELASAR SGGDWTIRSI RDRLDRPCPL 850
AEASARPATL GRTVIGRLER LVAGGKP 877
Length:877
Mass (Da):96,832
Last modified:March 24, 2009 - v1
Checksum:i03568BF0C300C671
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP001150 Genomic DNA. Translation: ACM00854.1.
RefSeqiWP_015920443.1. NC_011963.1.
YP_002525355.1. NC_011963.1.

Genome annotation databases

EnsemblBacteriaiACM00854; ACM00854; RSKD131_0994.
GeneIDi7359531.
KEGGirsk:RSKD131_0994.
PATRICi23181089. VBIRhoSph125910_2409.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP001150 Genomic DNA. Translation: ACM00854.1 .
RefSeqi WP_015920443.1. NC_011963.1.
YP_002525355.1. NC_011963.1.

3D structure databases

ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 557760.RSKD131_0994.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai ACM00854 ; ACM00854 ; RSKD131_0994 .
GeneIDi 7359531.
KEGGi rsk:RSKD131_0994.
PATRICi 23181089. VBIRhoSph125910_2409.

Phylogenomic databases

eggNOGi COG3285.
HOGENOMi HOG000222509.
KOi K01971.
OMAi DWTIRSI.
OrthoDBi EOG661H49.

Enzyme and pathway databases

BioCyci RSPH557760:GH1P-1003-MONOMER.

Family and domain databases

Gene3Di 2.40.50.140. 1 hit.
InterProi IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR002755. DNA_primase_S.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view ]
Pfami PF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF01896. DNA_primase_S. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view ]
SUPFAMi SSF50249. SSF50249. 1 hit.
TIGRFAMsi TIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEi PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. "Complete genome sequence of Rhodobacter sphaeroides KD131."
    Lim S.K., Kim S.J., Cha S.H., Oh Y.K., Rhee H.J., Kim M.S., Lee J.K.
    J. Bacteriol. 191:1118-1119(2009) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: KD131 / KCTC 12085.

Entry informationi

Entry nameiB9KRR2_RHOSK
AccessioniPrimary (citable) accession number: B9KRR2
Entry historyi
Integrated into UniProtKB/TrEMBL: March 24, 2009
Last sequence update: March 24, 2009
Last modified: September 3, 2014
This is version 37 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome

External Data

Dasty 3

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