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B9KNU3

- GCSP_RHOSK

UniProt

B9KNU3 - GCSP_RHOSK

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Protein

Glycine dehydrogenase (decarboxylating)

Gene

gcvP

Organism
Rhodobacter sphaeroides (strain KD131 / KCTC 12085)
Status
Reviewed - Annotation score: 3 out of 5- Protein inferred from homologyi

Functioni

The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO2 is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein.UniRule annotation

Catalytic activityi

Glycine + [glycine-cleavage complex H protein]-N(6)-lipoyl-L-lysine = [glycine-cleavage complex H protein]-S-aminomethyl-N(6)-dihydrolipoyl-L-lysine + CO2.UniRule annotation

Cofactori

pyridoxal 5'-phosphateUniRule annotation

GO - Molecular functioni

  1. glycine dehydrogenase (decarboxylating) activity Source: UniProtKB-EC
  2. pyridoxal phosphate binding Source: InterPro

GO - Biological processi

  1. glycine decarboxylation via glycine cleavage system Source: UniProtKB-HAMAP
Complete GO annotation...

Keywords - Molecular functioni

Oxidoreductase

Keywords - Ligandi

Pyridoxal phosphate

Enzyme and pathway databases

BioCyciRSPH557760:GH1P-517-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Glycine dehydrogenase (decarboxylating)UniRule annotation (EC:1.4.4.2UniRule annotation)
Alternative name(s):
Glycine cleavage system P-proteinUniRule annotation
Glycine decarboxylaseUniRule annotation
Glycine dehydrogenase (aminomethyl-transferring)UniRule annotation
Gene namesi
Name:gcvPUniRule annotation
Ordered Locus Names:RSKD131_0511
OrganismiRhodobacter sphaeroides (strain KD131 / KCTC 12085)
Taxonomic identifieri557760 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhodobacteralesRhodobacteraceaeRhodobacter
ProteomesiUP000001597: Chromosome 1

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 956956Glycine dehydrogenase (decarboxylating)PRO_1000147969Add
BLAST

Amino acid modifications

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Modified residuei697 – 6971N6-(pyridoxal phosphate)lysineUniRule annotation

Interactioni

Subunit structurei

The glycine cleavage system is composed of four proteins: P, T, L and H.UniRule annotation

Protein-protein interaction databases

STRINGi557760.RSKD131_0511.

Structurei

3D structure databases

ProteinModelPortaliB9KNU3.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the GcvP family.UniRule annotation

Phylogenomic databases

eggNOGiCOG1003.
HOGENOMiHOG000239369.
KOiK00281.
OMAiTAYLTHP.
OrthoDBiEOG6HMXDX.

Family and domain databases

Gene3Di3.40.640.10. 2 hits.
HAMAPiMF_00711. GcvP.
InterProiIPR020580. GDC-P_N.
IPR020581. GDC_P.
IPR003437. GDC_P_homo.
IPR015424. PyrdxlP-dep_Trfase.
IPR015421. PyrdxlP-dep_Trfase_major_sub1.
[Graphical view]
PANTHERiPTHR11773. PTHR11773. 1 hit.
PfamiPF02347. GDC-P. 2 hits.
[Graphical view]
SUPFAMiSSF53383. SSF53383. 3 hits.
TIGRFAMsiTIGR00461. gcvP. 1 hit.

Sequencei

Sequence statusi: Complete.

B9KNU3-1 [UniParc]FASTAAdd to Basket

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        10         20         30         40         50
MSFTPTDYNA YDFANRRHIG PSPSEMEEML RVVGVSSLDQ LIEETVPASI
60 70 80 90 100
RQETPLDWAP LAEHELLARM REVAAKNRVM TSLIGQGYYG TVTPPAIQRN
110 120 130 140 150
ILENPAWYTA YTPYQPEIAQ GRLEALLNYQ TMVADLTGLP VANASLLDEA
160 170 180 190 200
TAAAEAMTMA ERASKSKARA FFVDADCHPQ TISVIRTRAE PLGIEVIVGH
210 220 230 240 250
PAQLVPEDVF GALFQYPGTY GLVRDFTRDI AALHEAKALA VVATDLLALC
260 270 280 290 300
LLKEPGAMGA DIAIGSSQRF GVPMGYGGPH AAFMSCKDDL KRSMPGRLVG
310 320 330 340 350
VSVDARGNKA YRLALQTREQ HIRREKATSN VCTAQALLAV MASFYAVFHG
360 370 380 390 400
PRGLRAIAER VHLNTVRLAT ALKEAGARVS PEAFFDTITV EVGVGQAGIL
410 420 430 440 450
AAARHRGINL RKVGRDRVGI SLDETTDAGV IARVLDAFGI HEPAPAKVGL
460 470 480 490 500
GFPEPLLRET GYLSHPVFQM NRAESEMMRY MRRLSDRDLA LDRAMIPLGS
510 520 530 540 550
CTMKLNAAAE MMPITWPEFG TLHPFAPADQ AAGYHEAIGD LAQRLCRITG
560 570 580 590 600
YDAMSMQPNS GAQGEYAGLL TILAYHRARG DAERTICLIP VSAHGTNPAS
610 620 630 640 650
AQMAGMKVVV VKSAPNGDVD LEDFRDKAAA AGDRLAACMI TYPSTHGVFE
660 670 680 690 700
ETVREVCRIT HEHGGQVYID GANMNAMVGL VQPGAIGGDV SHLNLHKTFA
710 720 730 740 750
IPHGGGGPGM GPIGVKAHLA PYLPGHPEVT GPLTGGHDEA ADEGPVSAAP
760 770 780 790 800
YGSASILLIS WAYCLMMGGE GLTQATRVAI LNANYIAARL RGAYKVLFMG
810 820 830 840 850
NRGRVAHECI LDTRPFAEAG VTVDDIAKRL IDNGFHAPTM SWPVPGTLMV
860 870 880 890 900
EPTESETKAE IDRFVAALLA IREEIRAVEE GEIAAADSPL RHAPHTVEDL
910 920 930 940 950
VADWDRKYPR EQGCFPPGSF RVDKYWPPVG RVDNAWGDRN LVCTCPPVES

YSIAAQ
Length:956
Mass (Da):103,086
Last modified:March 24, 2009 - v1
Checksum:i04DE9600138B50B3
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001150 Genomic DNA. Translation: ACM00371.1.
RefSeqiWP_011337303.1. NC_011963.1.
YP_002524872.1. NC_011963.1.

Genome annotation databases

EnsemblBacteriaiACM00371; ACM00371; RSKD131_0511.
GeneIDi7358533.
KEGGirsk:RSKD131_0511.
PATRICi23180110. VBIRhoSph125910_1924.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001150 Genomic DNA. Translation: ACM00371.1 .
RefSeqi WP_011337303.1. NC_011963.1.
YP_002524872.1. NC_011963.1.

3D structure databases

ProteinModelPortali B9KNU3.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 557760.RSKD131_0511.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai ACM00371 ; ACM00371 ; RSKD131_0511 .
GeneIDi 7358533.
KEGGi rsk:RSKD131_0511.
PATRICi 23180110. VBIRhoSph125910_1924.

Phylogenomic databases

eggNOGi COG1003.
HOGENOMi HOG000239369.
KOi K00281.
OMAi TAYLTHP.
OrthoDBi EOG6HMXDX.

Enzyme and pathway databases

BioCyci RSPH557760:GH1P-517-MONOMER.

Family and domain databases

Gene3Di 3.40.640.10. 2 hits.
HAMAPi MF_00711. GcvP.
InterProi IPR020580. GDC-P_N.
IPR020581. GDC_P.
IPR003437. GDC_P_homo.
IPR015424. PyrdxlP-dep_Trfase.
IPR015421. PyrdxlP-dep_Trfase_major_sub1.
[Graphical view ]
PANTHERi PTHR11773. PTHR11773. 1 hit.
Pfami PF02347. GDC-P. 2 hits.
[Graphical view ]
SUPFAMi SSF53383. SSF53383. 3 hits.
TIGRFAMsi TIGR00461. gcvP. 1 hit.
ProtoNeti Search...

Publicationsi

  1. "Complete genome sequence of Rhodobacter sphaeroides KD131."
    Lim S.-K., Kim S.J., Cha S.H., Oh Y.-K., Rhee H.-J., Kim M.-S., Lee J.K.
    J. Bacteriol. 191:1118-1119(2009) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: KD131 / KCTC 12085.

Entry informationi

Entry nameiGCSP_RHOSK
AccessioniPrimary (citable) accession number: B9KNU3
Entry historyi
Integrated into UniProtKB/Swiss-Prot: July 28, 2009
Last sequence update: March 24, 2009
Last modified: November 26, 2014
This is version 42 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3