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Protein

Superoxide dismutase

Gene

sodB

Organism
Campylobacter lari (strain RM2100 / D67 / ATCC BAA-1060)
Status
Unreviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

Destroys radicals which are normally produced within the cells and which are toxic to biological systems.UniRule annotation

Catalytic activityi

2 superoxide + 2 H+ = O2 + H2O2.UniRule annotation

Sites

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Metal bindingi26Divalent metal cationUniRule annotation1
Metal bindingi73Divalent metal cationUniRule annotation1
Metal bindingi161Divalent metal cationUniRule annotation1
Metal bindingi165Divalent metal cationUniRule annotation1

GO - Molecular functioni

Keywordsi

Molecular functionOxidoreductaseUniRule annotationImported
LigandMetal-bindingUniRule annotation

Names & Taxonomyi

Protein namesi
Recommended name:
Superoxide dismutaseUniRule annotation (EC:1.15.1.1UniRule annotation)
Gene namesi
Name:sodBImported
Ordered Locus Names:Cla_0050Imported
OrganismiCampylobacter lari (strain RM2100 / D67 / ATCC BAA-1060)Imported
Taxonomic identifieri306263 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaEpsilonproteobacteriaCampylobacteralesCampylobacteraceaeCampylobacter
Proteomesi
  • UP000007727 Componenti: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi306263.Cla_0050.

Structurei

3D structure databases

ProteinModelPortaliB9KED2.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini2 – 80Sod_Fe_NInterPro annotationAdd BLAST79
Domaini94 – 193Sod_Fe_CInterPro annotationAdd BLAST100

Sequence similaritiesi

Belongs to the iron/manganese superoxide dismutase family.UniRule annotation

Phylogenomic databases

eggNOGiENOG4105CK4. Bacteria.
COG0605. LUCA.
HOGENOMiHOG000013584.
KOiK04564.
OMAiKWGSFDK.
OrthoDBiPOG091H03Q7.

Family and domain databases

InterProiView protein in InterPro
IPR001189. Mn/Fe_SOD.
IPR019833. Mn/Fe_SOD_BS.
IPR019832. Mn/Fe_SOD_C.
IPR019831. Mn/Fe_SOD_N.
PfamiView protein in Pfam
PF02777. Sod_Fe_C. 1 hit.
PF00081. Sod_Fe_N. 1 hit.
PIRSFiPIRSF000349. SODismutase. 1 hit.
PRINTSiPR01703. MNSODISMTASE.
SUPFAMiSSF46609. SSF46609. 1 hit.
SSF54719. SSF54719. 1 hit.
PROSITEiView protein in PROSITE
PS00088. SOD_MN. 1 hit.

Sequencei

Sequence statusi: Complete.

B9KED2-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MFELRKLPYE ADAFGDFLSA ETFAFHHGKH HQTYVNNLNN LIKDTEFVGK
60 70 80 90 100
DLVYIIQNSN GGVFNNAAQV YNHDFYFDCI KPKTCCGCGC SLSDEFKAAV
110 120 130 140 150
EKDFGSMENL KEEFIKGATG VFGSGWFWLV YNTQNQKLEL VATSNAATPI
160 170 180 190 200
TEGKVPLLVV DVWEHAYYVD HRNARPAYLD KFYAHINWEF VAKAYEWAIK
210
EGMNSVSFYA NELHPVK
Length:217
Mass (Da):24,769
Last modified:March 24, 2009 - v1
Checksum:iB374D42236236430
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000932 Genomic DNA. Translation: ACM63417.1.
RefSeqiWP_012660803.1. NC_012039.1.

Genome annotation databases

EnsemblBacteriaiACM63417; ACM63417; Cla_0050.
GeneIDi7410611.
KEGGicla:Cla_0050.
PATRICifig|306263.5.peg.50.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000932 Genomic DNA. Translation: ACM63417.1.
RefSeqiWP_012660803.1. NC_012039.1.

3D structure databases

ProteinModelPortaliB9KED2.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi306263.Cla_0050.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiACM63417; ACM63417; Cla_0050.
GeneIDi7410611.
KEGGicla:Cla_0050.
PATRICifig|306263.5.peg.50.

Phylogenomic databases

eggNOGiENOG4105CK4. Bacteria.
COG0605. LUCA.
HOGENOMiHOG000013584.
KOiK04564.
OMAiKWGSFDK.
OrthoDBiPOG091H03Q7.

Family and domain databases

InterProiView protein in InterPro
IPR001189. Mn/Fe_SOD.
IPR019833. Mn/Fe_SOD_BS.
IPR019832. Mn/Fe_SOD_C.
IPR019831. Mn/Fe_SOD_N.
PfamiView protein in Pfam
PF02777. Sod_Fe_C. 1 hit.
PF00081. Sod_Fe_N. 1 hit.
PIRSFiPIRSF000349. SODismutase. 1 hit.
PRINTSiPR01703. MNSODISMTASE.
SUPFAMiSSF46609. SSF46609. 1 hit.
SSF54719. SSF54719. 1 hit.
PROSITEiView protein in PROSITE
PS00088. SOD_MN. 1 hit.
ProtoNetiSearch...

Entry informationi

Entry nameiB9KED2_CAMLR
AccessioniPrimary (citable) accession number: B9KED2
Entry historyiIntegrated into UniProtKB/TrEMBL: March 24, 2009
Last sequence update: March 24, 2009
Last modified: June 7, 2017
This is version 53 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.