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B9K4A7

- B9K4A7_AGRVS

UniProt

B9K4A7 - B9K4A7_AGRVS

Protein
Submitted name:

DNA ligase D

Gene

ligD

Organism
Agrobacterium vitis (strain S4 / ATCC BAA-846) (Rhizobium vitis (strain S4))
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi
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    • History
      Entry version 42 (01 Oct 2014)
      Sequence version 1 (24 Mar 2009)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. ATP binding Source: InterPro
    2. DNA ligase (ATP) activity Source: InterPro

    GO - Biological processi

    1. DNA recombination Source: InterPro
    2. DNA repair Source: InterPro

    Keywords - Molecular functioni

    LigaseImported

    Enzyme and pathway databases

    BioCyciAVIT311402:GH2Y-4949-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    DNA ligase DImported
    Gene namesi
    Name:ligDImported
    Ordered Locus Names:Avi_8017Imported
    Encoded oniPlasmid pTiS4Imported
    OrganismiAgrobacterium vitis (strain S4 / ATCC BAA-846) (Rhizobium vitis (strain S4))Imported
    Taxonomic identifieri311402 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhizobialesRhizobiaceaeRhizobium/Agrobacterium groupAgrobacterium
    ProteomesiUP000001596: Plasmid pTiS4

    PTM / Processingi

    Proteomic databases

    PRIDEiB9K4A7.

    Interactioni

    Protein-protein interaction databases

    STRINGi311402.Avi_8017.

    Family & Domainsi

    Phylogenomic databases

    eggNOGiCOG3285.
    HOGENOMiHOG000222509.
    KOiK01971.
    OMAiMASACKM.
    OrthoDBiEOG661H49.

    Family and domain databases

    Gene3Di2.40.50.140. 1 hit.
    InterProiIPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR014146. DNA_pol_LigD_ligase_dom.
    IPR014144. LigD_PE_domain.
    IPR014145. LigD_pol.
    IPR012340. NA-bd_OB-fold.
    IPR014143. NHEJ_ligase_prk.
    [Graphical view]
    PfamiPF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF13298. LigD_N. 1 hit.
    [Graphical view]
    SUPFAMiSSF50249. SSF50249. 1 hit.
    TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
    TIGR02778. ligD_pol. 1 hit.
    TIGR02779. NHEJ_ligase_lig. 1 hit.
    TIGR02776. NHEJ_ligase_prk. 1 hit.
    PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    B9K4A7-1 [UniParc]FASTAAdd to Basket

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    MPDNLSKYRE KRDFKKTAEP SGEVGVKSSN RRRFVIQKHD ATRLHYDLRI    50
    EMDGVFKSWA VTKGPSLDPH DKRLAVEVED HPLDYGDFEG TIPKGQYGGG 100
    TVMLWDRGYW EPEGNKTAEQ ALAKGDFKFT LEGERLHGSF VLVRMRGREG 150
    EKRTNWLLIK HHDDHAVEEN GAAILEENDT SVASGRTMEA IASGKGRKPK 200
    PFMTQGSVVE ADAVWDSTEG LAADERKAGT KTKAKPTKKA AAAAKQPNTG 250
    MPEFVPPQLC ETFSRPPSAE GWIHEVKFDG YRIQMRVVDG NVTLKTRKGL 300
    DWTAKWPAIA KAASSLPDCI IDGEICALDN HGAPDFAALQ AALSEEKTDD 350
    LVFFGFDLLF EGEEDLREAP LTERKERLSA MLSDAGDDPR LRFVEHFETG 400
    GDAVLKSACR LSLEGIVSKK GDAPYQSGRS DTWTKSKCRA GHEVVIGAYA 450
    TTNGAFRSLL VGVYRGDHFV YVGRVGTGYG AKVVDQILPK LQALEASKSP 500
    FTGIGAPKKA AEIVWLKPEL VAEIEFAGWT ADGQVRQAAF KGLREDKPAK 550
    EVEAEKPAEP AEVDTPDPET ARKPAPTPTT SSRLRKGAKV DVMGVLVSSP 600
    DKELWPDALD GEPVTKVDLA HYYEAVGPWL IDHIKGRPCS IIRTPDGIGG 650
    EQFFQRHAMQ GTSNLIEQVK VSGDKQPYLQ IGRVEGLAAI AQIGGAELHP 700
    WNCEPYQPEV PGRLVFDLDP GPDVDFATVV EGAREIRDRL EELGLVSFCK 750
    TTGGKGLHVV TPLAVPKGKK LSWDEGKAFA HDVCLQMARD NPELYLTKMS 800
    KAQREGRIFL DYLRNDRTST AVAPLSPRAR PGATVSMPLN WAQVKKGLDP 850
    KRFTIRTVPG LLKDNTAWQD YCDGQRPLEQ AIKRLEKLMR RAA 893
    Length:893
    Mass (Da):98,374
    Last modified:March 24, 2009 - v1
    Checksum:i25FBFD8BB5F51957
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP000637 Genomic DNA. Translation: ACM39557.1.
    RefSeqiWP_012648924.1. NC_011982.1.
    YP_002539996.1. NC_011982.1.

    Genome annotation databases

    EnsemblBacteriaiACM39557; ACM39557; Avi_8017.
    GeneIDi7365147.
    KEGGiavi:Avi_8017.
    PATRICi20821776. VBIAgrVit37146_0593.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP000637 Genomic DNA. Translation: ACM39557.1 .
    RefSeqi WP_012648924.1. NC_011982.1.
    YP_002539996.1. NC_011982.1.

    3D structure databases

    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 311402.Avi_8017.

    Proteomic databases

    PRIDEi B9K4A7.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai ACM39557 ; ACM39557 ; Avi_8017 .
    GeneIDi 7365147.
    KEGGi avi:Avi_8017.
    PATRICi 20821776. VBIAgrVit37146_0593.

    Phylogenomic databases

    eggNOGi COG3285.
    HOGENOMi HOG000222509.
    KOi K01971.
    OMAi MASACKM.
    OrthoDBi EOG661H49.

    Enzyme and pathway databases

    BioCyci AVIT311402:GH2Y-4949-MONOMER.

    Family and domain databases

    Gene3Di 2.40.50.140. 1 hit.
    InterProi IPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR014146. DNA_pol_LigD_ligase_dom.
    IPR014144. LigD_PE_domain.
    IPR014145. LigD_pol.
    IPR012340. NA-bd_OB-fold.
    IPR014143. NHEJ_ligase_prk.
    [Graphical view ]
    Pfami PF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF13298. LigD_N. 1 hit.
    [Graphical view ]
    SUPFAMi SSF50249. SSF50249. 1 hit.
    TIGRFAMsi TIGR02777. LigD_PE_dom. 1 hit.
    TIGR02778. ligD_pol. 1 hit.
    TIGR02779. NHEJ_ligase_lig. 1 hit.
    TIGR02776. NHEJ_ligase_prk. 1 hit.
    PROSITEi PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].

    Entry informationi

    Entry nameiB9K4A7_AGRVS
    AccessioniPrimary (citable) accession number: B9K4A7
    Entry historyi
    Integrated into UniProtKB/TrEMBL: March 24, 2009
    Last sequence update: March 24, 2009
    Last modified: October 1, 2014
    This is version 42 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, PlasmidImported, Reference proteomeImported

    External Data

    Dasty 3