B9K4A7 (B9K4A7_AGRVS) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
DNA ligase D EMBL ACM39557.1

Gene names

Name:	ligD EMBL ACM39557.1
Ordered Locus Names:	Avi_8017 EMBL ACM39557.1

Encoded on

Plasmid pTiS4 EMBL ACM39557.1

Organism

Agrobacterium vitis (strain S4 / ATCC BAA-846) (Rhizobium vitis (strain S4)) [Complete proteome] [HAMAP] EMBL ACM39557.1

Taxonomic identifier

311402 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Proteobacteria › Alphaproteobacteria › Rhizobiales › Rhizobiaceae › Rhizobium/Agrobacterium group › Agrobacterium › Agrobacterium vitis

Protein attributes

Sequence length	893 AA.
Sequence status	Complete.
Protein existence	Predicted

Ontologies

Keywords
Molecular function	Ligase EMBL ACM39557.1
Technical term	Complete proteome Plasmid EMBL ACM39557.1
Gene Ontology (GO)
Biological_process	DNA recombination Inferred from electronic annotation. Source: InterPro DNA repair Inferred from electronic annotation. Source: InterPro
Molecular_function	ATP binding Inferred from electronic annotation. Source: InterPro DNA ligase (ATP) activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	B9K4A7 [UniParc]. Last modified March 24, 2009. Version 1. Checksum: 25FBFD8BB5F51957	FASTA	893	98,374
	10 20 30 40 50 60 MPDNLSKYRE KRDFKKTAEP SGEVGVKSSN RRRFVIQKHD ATRLHYDLRI EMDGVFKSWA 70 80 90 100 110 120 VTKGPSLDPH DKRLAVEVED HPLDYGDFEG TIPKGQYGGG TVMLWDRGYW EPEGNKTAEQ 130 140 150 160 170 180 ALAKGDFKFT LEGERLHGSF VLVRMRGREG EKRTNWLLIK HHDDHAVEEN GAAILEENDT 190 200 210 220 230 240 SVASGRTMEA IASGKGRKPK PFMTQGSVVE ADAVWDSTEG LAADERKAGT KTKAKPTKKA 250 260 270 280 290 300 AAAAKQPNTG MPEFVPPQLC ETFSRPPSAE GWIHEVKFDG YRIQMRVVDG NVTLKTRKGL 310 320 330 340 350 360 DWTAKWPAIA KAASSLPDCI IDGEICALDN HGAPDFAALQ AALSEEKTDD LVFFGFDLLF 370 380 390 400 410 420 EGEEDLREAP LTERKERLSA MLSDAGDDPR LRFVEHFETG GDAVLKSACR LSLEGIVSKK 430 440 450 460 470 480 GDAPYQSGRS DTWTKSKCRA GHEVVIGAYA TTNGAFRSLL VGVYRGDHFV YVGRVGTGYG 490 500 510 520 530 540 AKVVDQILPK LQALEASKSP FTGIGAPKKA AEIVWLKPEL VAEIEFAGWT ADGQVRQAAF 550 560 570 580 590 600 KGLREDKPAK EVEAEKPAEP AEVDTPDPET ARKPAPTPTT SSRLRKGAKV DVMGVLVSSP 610 620 630 640 650 660 DKELWPDALD GEPVTKVDLA HYYEAVGPWL IDHIKGRPCS IIRTPDGIGG EQFFQRHAMQ 670 680 690 700 710 720 GTSNLIEQVK VSGDKQPYLQ IGRVEGLAAI AQIGGAELHP WNCEPYQPEV PGRLVFDLDP 730 740 750 760 770 780 GPDVDFATVV EGAREIRDRL EELGLVSFCK TTGGKGLHVV TPLAVPKGKK LSWDEGKAFA 790 800 810 820 830 840 HDVCLQMARD NPELYLTKMS KAQREGRIFL DYLRNDRTST AVAPLSPRAR PGATVSMPLN 850 860 870 880 890 WAQVKKGLDP KRFTIRTVPG LLKDNTAWQD YCDGQRPLEQ AIKRLEKLMR RAA

References

[1]

"Genome sequences of three agrobacterium biovars help elucidate the evolution of multichromosome genomes in bacteria." Slater S.C., Goldman B.S., Goodner B., Setubal J.C., Farrand S.K., Nester E.W., Burr T.J., Banta L., Dickerman A.W., Paulsen I., Otten L., Suen G., Welch R., Almeida N.F., Arnold F., Burton O.T., Du Z., Ewing A. , Godsy E., Heisel S., Houmiel K.L., Jhaveri J., Lu J., Miller N.M., Norton S., Chen Q., Phoolcharoen W., Ohlin V., Ondrusek D., Pride N., Stricklin S.L., Sun J., Wheeler C., Wilson L., Zhu H., Wood D.W. J. Bacteriol. 191:2501-2511(2009) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: S4 / ATCC BAA-846.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP000637 Genomic DNA. Translation: ACM39557.1.
RefSeq	YP_002539996.1. NC_011982.1.
3D structure databases
ModBase	Search...
Protein-protein interaction databases
STRING	311402.Avi_8017.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	ACM39557; ACM39557; Avi_8017.
GeneID	7365147.
KEGG	avi:Avi_8017.
PATRIC	20821776. VBIAgrVit37146_0593.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	COG3285.
HOGENOM	HOG000222509.
KO	K01971.
OMA	VSMPITW.
ProtClustDB	PRK05972.
Enzyme and pathway databases
BioCyc	AVIT311402:GH2Y-4794-MONOMER.
Family and domain databases
Gene3D	2.40.50.140. 1 hit.
InterPro	IPR012309. DNA_ligase_ATP-dep_C. IPR012310. DNA_ligase_ATP-dep_cent. IPR014146. DNA_pol_LigD_ligase_dom. IPR014144. LigD_PE_domain. IPR014145. LigD_pol. IPR012340. NA-bd_OB-fold. IPR014143. NHEJ_ligase_prk. [Graphical view]
Pfam	PF04679. DNA_ligase_A_C. 1 hit. PF01068. DNA_ligase_A_M. 1 hit. PF13298. LigD_N. 1 hit. [Graphical view]
SUPFAM	SSF50249. Nucleic_acid_OB. 1 hit.
TIGRFAMs	TIGR02777. LigD_PE_dom. 1 hit. TIGR02778. ligD_pol. 1 hit. TIGR02779. NHEJ_ligase_lig. 1 hit. TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITE	PS50160. DNA_LIGASE_A3. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

B9K4A7_AGRVS

Accession

Primary (citable) accession number: B9K4A7

Entry history

Integrated into UniProtKB/TrEMBL:	March 24, 2009
Last sequence update:	March 24, 2009
Last modified:	May 1, 2013
This is version 32 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)